Non-Coding RNA Search

Utr1-UTR01C120103

Sequence:


               
               AAAAAGATTATTCCCGGGGTTTGTTAATTACCCCCTAGGACCACACTGCTCTGAAAGTGC
AAATTGTTTGTAGACACGATTGCAGTTTGAAGTAACAGGAGCAGCGCCTTGAAATTATCA
GCAGAGAAGCGGATTGAGCAGCCTGGTTTCCATAAGCTCCATGGGGATACACACTGTTTC
TGGGTCTCACGGCACCCAGTGGCCTCTCCACAGTGATGGGTTCTCCCTGGGCATGGCTGC
ATGGGTAGCACTATTGGTGTCAGCTTCTCTAAGGAGGAGAGAAAATTTGCCCGAAGATGG
GAGAGGTGTTAAGCAAAGAAAGGGTTTTCAGGTTAACACGAAGGCAAGCTGAGTCACTAG
GATGCGTCAAAGCTGGGAGACAGTTTGAGGAGCAGGGCCAACATGCCAGCACGTGTGGAT
CCTGAGGGCTGCCAGTCAGCAGGATTCCTAAGGAAGTGAAACTTAAAGTAACACCAAATC
CGTTGATCCCAGCAAAACCTGGCAAGGGGCACCGACAGCCCCATGCATCTTCGTTGTTTC
TCTCCAAAAATTAGCAGAGTCAGGAAAGAGCTTGGATCCTCTGTTATTTGCAGTCCTTAA
AATCCTTAGATGAGACATCAGTCTTAACTCTGAGTGTACCTACATGAGATCGGCCAAAAC
TTTAGAACATTGTACAGTACAAACCATCTTGTACAATGCAAGCTCCTCGTCCACTCTCAA
AGTAGCAATATCTAATGTTAGCATATTCATATAGTAACAGCAGGAACTGGGCTACTGGGG
CCAGACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGATTATTCCCGGGGTTTGTTAATTACCCCCTAGGACCACACTGCTCTGAAAGTGC
AAATTGTTTGTAGACACGATTGCAGTTTGAAGTAACAGGAGCAGCGCCTTGAAATTATCA
GCAGAGAAGCGGATTGAGCAGCCTGGTTTCCATAAGCTCCATGGGGATACACACTGTTTC
TGGGTCTCACGGCACCCAGTGGCCTCTCCACAGTGATGGGTTCTCCCTGGGCATGGCTGC
ATGGGTAGCACTATTGGTGTCAGCTTCTCTAAGGAGGAGAGAAAATTTGCCCGAAGATGG
GAGAGGTGTTAAGCAAAGAAAGGGTTTTCAGGTTAACACGAAGGCAAGCTGAGTCACTAG
GATGCGTCAAAGCTGGGAGACAGTTTGAGGAGCAGGGCCAACATGCCAGCACGTGTGGAT
CCTGAGGGCTGCCAGTCAGCAGGATTCCTAAGGAAGTGAAACTTAAAGTAACACCAAATC
CGTTGATCCCAGCAAAACCTGGCAAGGGGCACCGACAGCCCCATGCATCTTCGTTGTTTC
TCTCCAAAAATTAGCAGAGTCAGGAAAGAGCTTGGATCCTCTGTTATTTGCAGTCCTTAA
AATCCTTAGATGAGACATCAGTCTTAACTCTGAGTGTACCTACATGAGATCGGCCAAAAC
TTTAGAACATTGTACAGTACAAACCATCTTGTACAATGCAAGCTCCTCGTCCACTCTCAA
AGTAGCAATATCTAATGTTAGCATATTCATATAGTAACAGCAGGAACTGGGCTACTGGGG
CCAGACCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.796189
               

               
               278-397, + strand, RNAz p=0.816243

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.796189
               

               
               278-397, + strand, RNAz p=0.816243

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-769, gnl|bosTau2|chr1 (24510425-24511196)
               

               
               1-769, gnl|Hg17|chr3 (16386295-16385526)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-769, gnl|bosTau2|chr1 (24510425-24511196)
               

               
               1-769, gnl|Hg17|chr3 (16386295-16385526)

	1-119, - strand, RNAz p=0.796189
	278-397, + strand, RNAz p=0.816243

	1-769, gnl\|bosTau2\|chr1 (24510425-24511196)
	1-769, gnl\|Hg17\|chr3 (16386295-16385526)