Non-Coding RNA Search

Utr1-UTR01D040086

Sequence:


               
               AAGAAAGCTCTGCTGTTGAGACCGTCTGAAGCGGGGGGTTGAAGGGGGGGGCACGAACTT
CCTGGGGAACGGTCTCCCCGAGGAGGGCAAGCCCAGAGACACCCGCCCAGCTCCCAGCAC
CCTTTTCTTCCAGGAACCTGAGAGGTCCTTTCCTTTGGGAGGGCTAGGGGAGGAGACCCA
GCCCACTCCCCGGTCGTAGCTGGAAAGGCAGGAGAGACCAGCCAGCATCTCCGGCGTGGT
TGCCACACGGGGGACACCGGTGGGTCGTCACCCCCCCCTACCTCTGTCCATGGAAACCCG
GAGAAAGAGTCCCGCGTGGAGAAGCCTGGATCTCTGCTAGAAAGAAAGGTAGGTTTGCAG
AGAGAATTGAATCTTGATTTGCAAACTTAGTTTCTTTCTTTCCTTTCAGTGGCTGATAAA
ATTCTCTGAATTTCCTCTTCCTAGCATATTTCTTGCAGCTGGGTTTAGGGGTGTGTGTGT
CTGTGCTCGCGCACAGATTTGTCAAATACTATATTTCCTTCCTAGACTCAGTTCTGAGAA
ACGTATAATCAAACAAGTGATTTCTCTTTTTTTCCTTCGAGTTTTTGTCATTCCTGGGCT
GTGGGGCTAGGGAAGTGGAGAGACTGTATTTTTCATACCCAAATGGAGCTTTTGGAAAAA
GCATTTATTTTCCCCCATTCGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAAGCTCTGCTGTTGAGACCGTCTGAAGCGGGGGGTTGAAGGGGGGGGCACGAACTT
CCTGGGGAACGGTCTCCCCGAGGAGGGCAAGCCCAGAGACACCCGCCCAGCTCCCAGCAC
CCTTTTCTTCCAGGAACCTGAGAGGTCCTTTCCTTTGGGAGGGCTAGGGGAGGAGACCCA
GCCCACTCCCCGGTCGTAGCTGGAAAGGCAGGAGAGACCAGCCAGCATCTCCGGCGTGGT
TGCCACACGGGGGACACCGGTGGGTCGTCACCCCCCCCTACCTCTGTCCATGGAAACCCG
GAGAAAGAGTCCCGCGTGGAGAAGCCTGGATCTCTGCTAGAAAGAAAGGTAGGTTTGCAG
AGAGAATTGAATCTTGATTTGCAAACTTAGTTTCTTTCTTTCCTTTCAGTGGCTGATAAA
ATTCTCTGAATTTCCTCTTCCTAGCATATTTCTTGCAGCTGGGTTTAGGGGTGTGTGTGT
CTGTGCTCGCGCACAGATTTGTCAAATACTATATTTCCTTCCTAGACTCAGTTCTGAGAA
ACGTATAATCAAACAAGTGATTTCTCTTTTTTTCCTTCGAGTTTTTGTCATTCCTGGGCT
GTGGGGCTAGGGAAGTGGAGAGACTGTATTTTTCATACCCAAATGGAGCTTTTGGAAAAA
GCATTTATTTTCCCCCATTCGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               158-277, - strand, RNAz p=0.923493

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-277, - strand, RNAz p=0.923493

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr16 (2792146-2792826)
               

               
               1-684, gnl|Hg17|chr1 (200327655-200328340)
               

               
               1-684, gnl|Mm7|chr1 (133690754-133690062)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr16 (2792146-2792826)
               

               
               1-684, gnl|Hg17|chr1 (200327655-200328340)
               

               
               1-684, gnl|Mm7|chr1 (133690754-133690062)

	1-684, gnl\|bosTau2\|chr16 (2792146-2792826)
	1-684, gnl\|Hg17\|chr1 (200327655-200328340)
	1-684, gnl\|Mm7\|chr1 (133690754-133690062)