Non-Coding RNA Search

Utr1-UTR01F010101

Sequence:


               
               ATTTACTGAGGGCAGCCGCGAGCGTGGGGCGGTCCTCGGATTGAAGGCGTGGTGTCCCTG
AATTTGGTTAACCAGCGGAAGAGAGGCTGGAGGAGACGCCCTCCACAAATACCTTGTTCT
GAAAGGAAGCTTCCAGGGGAGCTCATGACAATGATTATTCCCTGGGATCTCTGCGTTCAA
TGTCATGCCCCCAGAGTGAGGCACAGCTGACCCCTGCTTTCCCTGGAGACCCTCCAAGAC
CCACAGGTGGTGTTTAAGATTTGAGACCCTCTGAAAACTCTGGCTGAAATCCTGGAATGG
CTCTGATTGACTGAGCTTAGAGCCCAGCAGAGCAGCCACGCCTGTCTGTGATGGCCGGAG
GCTGCAAGTGCTCACACCTGACTCCTGGTCCAGCCGCTGCTCAGCGGGAGCCATGCGGAC
GCTGCCTGGGAAAGCCTTCCCCATCTGTGCAGCGAAAGGAGAGCAGCTGGCCTGAGAGTC
CCTTTGCATGATGCAATTATTCACAATGTAGAGAGTCATAGAGCACTGGAGCCAGGAGGA
ACCTTCCAGATCCCTCCAGGGCCAGGCTGCTTATCTCAGCAGCAGCAGCAGCAGCCCCAC
ATCTCCAAGGCAGCAAAGCTCCAAGCTGTCATTTCAAgccgcactggcagcatgtggaaa
ttcttgggcctgggatcaaatctcaaccacagctgtgacctttgccacggctgtggcaac
actggatcatncacacactgcactgggctggggatcgaaccTGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTACTGAGGGCAGCCGCGAGCGTGGGGCGGTCCTCGGATTGAAGGCGTGGTGTCCCTG
AATTTGGTTAACCAGCGGAAGAGAGGCTGGAGGAGACGCCCTCCACAAATACCTTGTTCT
GAAAGGAAGCTTCCAGGGGAGCTCATGACAATGATTATTCCCTGGGATCTCTGCGTTCAA
TGTCATGCCCCCAGAGTGAGGCACAGCTGACCCCTGCTTTCCCTGGAGACCCTCCAAGAC
CCACAGGTGGTGTTTAAGATTTGAGACCCTCTGAAAACTCTGGCTGAAATCCTGGAATGG
CTCTGATTGACTGAGCTTAGAGCCCAGCAGAGCAGCCACGCCTGTCTGTGATGGCCGGAG
GCTGCAAGTGCTCACACCTGACTCCTGGTCCAGCCGCTGCTCAGCGGGAGCCATGCGGAC
GCTGCCTGGGAAAGCCTTCCCCATCTGTGCAGCGAAAGGAGAGCAGCTGGCCTGAGAGTC
CCTTTGCATGATGCAATTATTCACAATGTAGAGAGTCATAGAGCACTGGAGCCAGGAGGA
ACCTTCCAGATCCCTCCAGGGCCAGGCTGCTTATCTCAGCAGCAGCAGCAGCAGCCCCAC
ATCTCCAAGGCAGCAAAGCTCCAAGCTGTCATTTCAAgccgcactggcagcatgtggaaa
ttcttgggcctgggatcaaatctcaaccacagctgtgacctttgccacggctgtggcaac
actggatcatncacacactgcactgggctggggatcgaaccTGTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               379-498, - strand, RNAz p=0.86902

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-498, - strand, RNAz p=0.86902

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               302-511, gnl|bosTau2|chr8 (33401897-33401688)
               

               
               302-511, gnl|canFam2|chr11 (58524481-58525153)
               

               
               302-511, gnl|dasNov1|scaffold_40036 (10679-10101)
               

               
               302-511, gnl|echTel1|scaffold_296350 (11815-11254)
               

               
               302-511, gnl|hg17|chr9 (98158742-98159414)
               

               
               302-511, gnl|Hg17|chr9 (98159012-98159222)
               

               
               302-511, gnl|mm7|chr4 (46704265-46704900)
               

               
               302-511, gnl|Mm7|chr4 (46704519-46704719)
               

               
               302-511, gnl|oryCun1|scaffold_206150 (110455-109903)
               

               
               302-511, gnl|panTro1|chr11 (82376321-82376993)
               

               
               302-511, gnl|rheMac2|chr15 (37912081-37911409)
               

               
               302-511, gnl|rn3|chr5 (63268467-63269092)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               302-511, gnl|bosTau2|chr8 (33401897-33401688)
               

               
               302-511, gnl|canFam2|chr11 (58524481-58525153)
               

               
               302-511, gnl|dasNov1|scaffold_40036 (10679-10101)
               

               
               302-511, gnl|echTel1|scaffold_296350 (11815-11254)
               

               
               302-511, gnl|hg17|chr9 (98158742-98159414)
               

               
               302-511, gnl|Hg17|chr9 (98159012-98159222)
               

               
               302-511, gnl|mm7|chr4 (46704265-46704900)
               

               
               302-511, gnl|Mm7|chr4 (46704519-46704719)
               

               
               302-511, gnl|oryCun1|scaffold_206150 (110455-109903)
               

               
               302-511, gnl|panTro1|chr11 (82376321-82376993)
               

               
               302-511, gnl|rheMac2|chr15 (37912081-37911409)
               

               
               302-511, gnl|rn3|chr5 (63268467-63269092)

	302-511, gnl\|bosTau2\|chr8 (33401897-33401688)
	302-511, gnl\|canFam2\|chr11 (58524481-58525153)
	302-511, gnl\|dasNov1\|scaffold_40036 (10679-10101)
	302-511, gnl\|echTel1\|scaffold_296350 (11815-11254)
	302-511, gnl\|hg17\|chr9 (98158742-98159414)
	302-511, gnl\|Hg17\|chr9 (98159012-98159222)
	302-511, gnl\|mm7\|chr4 (46704265-46704900)
	302-511, gnl\|Mm7\|chr4 (46704519-46704719)
	302-511, gnl\|oryCun1\|scaffold_206150 (110455-109903)
	302-511, gnl\|panTro1\|chr11 (82376321-82376993)
	302-511, gnl\|rheMac2\|chr15 (37912081-37911409)
	302-511, gnl\|rn3\|chr5 (63268467-63269092)