Non-Coding RNA Search

Utr1-UTR01F060086

Sequence:


               
               TATAGCTTGCCTTCTCAACCAGTTCTGACAGAACTACAACTGAGTTTCCTTCCTGCATGC
TGCATGCTTGCTATCAAGCTGAGGGCTCTAACTACAACTGAGTTTCCTTCCTGCATGCTG
CATGCTTGCTATCAAGCTGAGGGCTCTACACGTGAACACCAGTTCCCACTTATGGCCTTA
GGTTGTAGCGAGGAGGCAGGAAGGAGCTCATGTGTCAGAGGCACTGTGCTCCTTGTAAAG
CCCCCTCAGACCAGGGAACTCACTGAGGGAAGGTGCTGGTCTCTGGAAGCTTGGGCTGTC
GGGGAGCAGCCAAAGGGAGCCGTTTATAGGAACTGAAAGAATTCTTTCCTCTCATCGCTC
TTGGTGAGGGCCGCGACTGCCTCCTGGGGTCACACCCATCCCTCCAAGCCTTCGGCCATC
CTCTTAGGATCAAGGGTGTAACTCAGCCACCATCTGGCTTGGACTTGTCTTCAGGCCCGG
GGCTGGGCCAAGAACAGGGCCTCGCCGTGGCTTCCACCCTTCTTTCTTTTCTCCTCCCTC
TCTTTGGCCTCCACTTCATCTCCAACAAGTGAGTTGTGTTGCTTAGCTTTTTAATGAGGT
TTTTCCAGCCTCTTGTTGTTTTGTCCTTGACCATAAAGAACTCCCAGTGACTCCAAGCCG
AAAATAAAATTTGGCCAGAACTAAGCTGGGAATATAGTCTCATTATTGGTGTTGATATTT
TTAAGTCTCTCTTAAAATCCTAAAAAGAAAAATGAAAAAACAAGCTCTGGGAGAAAGGCA
GGATTTGTCCTAGAATGAATATCTGTGTGGGCATTCTAGAGTGAGGACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAGCTTGCCTTCTCAACCAGTTCTGACAGAACTACAACTGAGTTTCCTTCCTGCATGC
TGCATGCTTGCTATCAAGCTGAGGGCTCTAACTACAACTGAGTTTCCTTCCTGCATGCTG
CATGCTTGCTATCAAGCTGAGGGCTCTACACGTGAACACCAGTTCCCACTTATGGCCTTA
GGTTGTAGCGAGGAGGCAGGAAGGAGCTCATGTGTCAGAGGCACTGTGCTCCTTGTAAAG
CCCCCTCAGACCAGGGAACTCACTGAGGGAAGGTGCTGGTCTCTGGAAGCTTGGGCTGTC
GGGGAGCAGCCAAAGGGAGCCGTTTATAGGAACTGAAAGAATTCTTTCCTCTCATCGCTC
TTGGTGAGGGCCGCGACTGCCTCCTGGGGTCACACCCATCCCTCCAAGCCTTCGGCCATC
CTCTTAGGATCAAGGGTGTAACTCAGCCACCATCTGGCTTGGACTTGTCTTCAGGCCCGG
GGCTGGGCCAAGAACAGGGCCTCGCCGTGGCTTCCACCCTTCTTTCTTTTCTCCTCCCTC
TCTTTGGCCTCCACTTCATCTCCAACAAGTGAGTTGTGTTGCTTAGCTTTTTAATGAGGT
TTTTCCAGCCTCTTGTTGTTTTGTCCTTGACCATAAAGAACTCCCAGTGACTCCAAGCCG
AAAATAAAATTTGGCCAGAACTAAGCTGGGAATATAGTCTCATTATTGGTGTTGATATTT
TTAAGTCTCTCTTAAAATCCTAAAAAGAAAAATGAAAAAACAAGCTCTGGGAGAAAGGCA
GGATTTGTCCTAGAATGAATATCTGTGTGGGCATTCTAGAGTGAGGACTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               396-555, - strand, RNAz p=0.990218
               

               
               636-831, - strand, RNAz p=0.676695

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-555, - strand, RNAz p=0.990218
               

               
               636-831, - strand, RNAz p=0.676695

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               204-831, gnl|bosTau2|chr19 (6314759-6314144)
               

               
               204-831, gnl|Hg17|chr17 (56754415-56755103)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               204-831, gnl|bosTau2|chr19 (6314759-6314144)
               

               
               204-831, gnl|Hg17|chr17 (56754415-56755103)

	396-555, - strand, RNAz p=0.990218
	636-831, - strand, RNAz p=0.676695

	204-831, gnl\|bosTau2\|chr19 (6314759-6314144)
	204-831, gnl\|Hg17\|chr17 (56754415-56755103)