Non-Coding RNA Search

Utr1-UTR01F110106

Sequence:


               
               TTCCCTGCCCTTCTGCCCTTTTCCAGAGGGCTGAGCGCTCTGACCTCGGGGTACAGCGTG
GAAGGCCGGGCGGAAAGGGAGGCGGGATGAGAGGCGGGGAGTCTGTAGTTTGGTTTCTGG
AGGTGGAGGGAAGGGAAGGGAAAGAGGTTAACTTAGAGATCTGGAGACTGCTCGCGAGGA
CTAAGCCATTGACGCCCCTCTCCTTGGCAGTGGCAGCAATCTTTCTTCTCCCCCACCTTC
TTTTTTAAAGAGTACTTTCCCTGGAATCGGAGCCTTAACTGTCCCTCCTCAGCCCTATCC
AGCGAAGAGCTGAGCTCTCCCTGCGGAGGCAGCGCCCTCCCGGAACAGTTTATCTTTGGA
CGGATTTCTTTAAAAGAAAGAGAAACCAACAGGTTGCCAGCCCCGGCGCCACACAAGTCT
GCAGAGAGGGAAGCACGGTCCTGGTTTCCCCTGCCTGAGCTGGCCCCGCTTGGGCTGCGG
GAGGAGAGGGGAGGGAGGGGGCTATGGCTCGGCCTGACCCGTCCGCGCCGCCTTCGCTGC
TGCTGCTGCTCTTGGCGCAGCTGGCGGGCCGGGCGACGGCCGCTTCCAAGGCGCCGGTGT
GCCAGGAAATCACAGTGCCTATGTGCCGCGGCATCGGCTACAACCTGACGCACATGCCCA
ACCAGTTCAACCACGACACGCAGGACGAGGCGGGCCTCGAGGTGCACCAGTTCTGGCCGT
TGGTGGAGATCCACTGCTCGCCGGACCTGCGCTTCTTCCTGTGCTCCATGTACACGCCCA
TCTGCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCTGCCCTTCTGCCCTTTTCCAGAGGGCTGAGCGCTCTGACCTCGGGGTACAGCGTG
GAAGGCCGGGCGGAAAGGGAGGCGGGATGAGAGGCGGGGAGTCTGTAGTTTGGTTTCTGG
AGGTGGAGGGAAGGGAAGGGAAAGAGGTTAACTTAGAGATCTGGAGACTGCTCGCGAGGA
CTAAGCCATTGACGCCCCTCTCCTTGGCAGTGGCAGCAATCTTTCTTCTCCCCCACCTTC
TTTTTTAAAGAGTACTTTCCCTGGAATCGGAGCCTTAACTGTCCCTCCTCAGCCCTATCC
AGCGAAGAGCTGAGCTCTCCCTGCGGAGGCAGCGCCCTCCCGGAACAGTTTATCTTTGGA
CGGATTTCTTTAAAAGAAAGAGAAACCAACAGGTTGCCAGCCCCGGCGCCACACAAGTCT
GCAGAGAGGGAAGCACGGTCCTGGTTTCCCCTGCCTGAGCTGGCCCCGCTTGGGCTGCGG
GAGGAGAGGGGAGGGAGGGGGCTATGGCTCGGCCTGACCCGTCCGCGCCGCCTTCGCTGC
TGCTGCTGCTCTTGGCGCAGCTGGCGGGCCGGGCGACGGCCGCTTCCAAGGCGCCGGTGT
GCCAGGAAATCACAGTGCCTATGTGCCGCGGCATCGGCTACAACCTGACGCACATGCCCA
ACCAGTTCAACCACGACACGCAGGACGAGGCGGGCCTCGAGGTGCACCAGTTCTGGCCGT
TGGTGGAGATCCACTGCTCGCCGGACCTGCGCTTCTTCCTGTGCTCCATGTACACGCCCA
TCTGCCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|15826377|pdb|1IJY|B

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|15826377|pdb|1IJY|B

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-115, + strand, RNAz p=0.91771

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, + strand, RNAz p=0.91771

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-789, gnl|bosTau2|chr2 (62144768-62145554)
               

               
               1-789, gnl|Hg17|chr2 (208459466-208458684)
               

               
               1-789, gnl|Mm7|chr1 (64978830-64978043)
               


               
               557-677, gnl|bosTau2|chr13 (15027601-15027478)
               

               
               557-677, gnl|Hg17|chr10 (35970307-35970184)
               

               
               557-677, gnl|Mm7|chr18 (9416730-9416853)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-789, gnl|bosTau2|chr2 (62144768-62145554)
               

               
               1-789, gnl|Hg17|chr2 (208459466-208458684)
               

               
               1-789, gnl|Mm7|chr1 (64978830-64978043)
               


               
               557-677, gnl|bosTau2|chr13 (15027601-15027478)
               

               
               557-677, gnl|Hg17|chr10 (35970307-35970184)
               

               
               557-677, gnl|Mm7|chr18 (9416730-9416853)

	1-789, gnl\|bosTau2\|chr2 (62144768-62145554)
	1-789, gnl\|Hg17\|chr2 (208459466-208458684)
	1-789, gnl\|Mm7\|chr1 (64978830-64978043)

	557-677, gnl\|bosTau2\|chr13 (15027601-15027478)
	557-677, gnl\|Hg17\|chr10 (35970307-35970184)
	557-677, gnl\|Mm7\|chr18 (9416730-9416853)