Non-Coding RNA Search

Utr1-UTR01G070084

Sequence:


               
               AACAATAATAGCTAAAACTGGGAAATGGCTTCTTTTTCACATCAAATAATGACTTTGAGA
AACAGTCTGTTGTGCCAACATCCTCCCTGGCCTCCAGTCCCCTTTTCGCACCCCACCCCC
AGGGCCCGAGTTCCTCAGGAAGCGTTTCCAGTGTGGGCCTAGGGCTGCCGCAAGGCCTGG
GCAGCTTGGTAACAGGCACAGGGCCCTGTGAGAGCACTTGACAGCCTCACCCACAGAGGG
GCCGCTGCTCTCCTTGCTGGCAGCCCACACAGGAAGGAGGGGCCGGACTCGGCTTGCAGT
GCTTTGTGTTTATTTCCTGGCTCAGCGTAGAGTTGTAAGGCTTTGCCTGTGAGGGTACTG
CACCTGCCCTTTGACAGTTGTCACCGCGGGGGCAGGTGACTGCCTTCTAGCCCTGACTGT
AGGCCTTCCTGTCCTGACAAATGAAGTCAGTAGAGGAGACGAGACCTGATTAGTGGTGTT
CGAGCTTATTTTTTATGTGTTTATTAGAACTCTTTAGCCAAGTGAAAGCTCAAGTGGAAC
TCTGGTGTATAGAGGAAAGAGGAACCAAAGAGTGAGGCTGAGGGTAGACCCTCTCCTTCT
CTCCCTCTGAAAATCCCTGAGGTTTCTCCTAAACCCTAAATAAGCCTCAGAAGATCAGGG
ACTCGATGCTTTCAGAGGTGACTTGGAGCTTACATTTACTCATTTGATGTCTCTCTCCTA
GATGTGTTTCTCTTTAGAGCAAGAACTCTGTCTCATTGTTGCTGCCTAGGTACCTCGTGC
TTTGTACATGGTGGTAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAATAATAGCTAAAACTGGGAAATGGCTTCTTTTTCACATCAAATAATGACTTTGAGA
AACAGTCTGTTGTGCCAACATCCTCCCTGGCCTCCAGTCCCCTTTTCGCACCCCACCCCC
AGGGCCCGAGTTCCTCAGGAAGCGTTTCCAGTGTGGGCCTAGGGCTGCCGCAAGGCCTGG
GCAGCTTGGTAACAGGCACAGGGCCCTGTGAGAGCACTTGACAGCCTCACCCACAGAGGG
GCCGCTGCTCTCCTTGCTGGCAGCCCACACAGGAAGGAGGGGCCGGACTCGGCTTGCAGT
GCTTTGTGTTTATTTCCTGGCTCAGCGTAGAGTTGTAAGGCTTTGCCTGTGAGGGTACTG
CACCTGCCCTTTGACAGTTGTCACCGCGGGGGCAGGTGACTGCCTTCTAGCCCTGACTGT
AGGCCTTCCTGTCCTGACAAATGAAGTCAGTAGAGGAGACGAGACCTGATTAGTGGTGTT
CGAGCTTATTTTTTATGTGTTTATTAGAACTCTTTAGCCAAGTGAAAGCTCAAGTGGAAC
TCTGGTGTATAGAGGAAAGAGGAACCAAAGAGTGAGGCTGAGGGTAGACCCTCTCCTTCT
CTCCCTCTGAAAATCCCTGAGGTTTCTCCTAAACCCTAAATAAGCCTCAGAAGATCAGGG
ACTCGATGCTTTCAGAGGTGACTTGGAGCTTACATTTACTCATTTGATGTCTCTCTCCTA
GATGTGTTTCTCTTTAGAGCAAGAACTCTGTCTCATTGTTGCTGCCTAGGTACCTCGTGC
TTTGTACATGGTGGTAATTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               258-360, + strand, RNAz p=0.606918
               

               
               558-664, - strand, RNAz p=0.594629

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-360, + strand, RNAz p=0.606918
               

               
               558-664, - strand, RNAz p=0.594629

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-360, gnl|bosTau2|chr21 (1083417-1083045)
               

               
               1-360, gnl|Hg17|chr15 (76127678-76127310)
               

               
               1-360, gnl|Mm7|chr9 (89872178-89871823)
               


               
               415-800, gnl|bosTau2|chr21 (1082887-1082498)
               

               
               415-800, gnl|Hg17|chr15 (76127111-76126700)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-360, gnl|bosTau2|chr21 (1083417-1083045)
               

               
               1-360, gnl|Hg17|chr15 (76127678-76127310)
               

               
               1-360, gnl|Mm7|chr9 (89872178-89871823)
               


               
               415-800, gnl|bosTau2|chr21 (1082887-1082498)
               

               
               415-800, gnl|Hg17|chr15 (76127111-76126700)

	258-360, + strand, RNAz p=0.606918
	558-664, - strand, RNAz p=0.594629

	1-360, gnl\|bosTau2\|chr21 (1083417-1083045)
	1-360, gnl\|Hg17\|chr15 (76127678-76127310)
	1-360, gnl\|Mm7\|chr9 (89872178-89871823)

	415-800, gnl\|bosTau2\|chr21 (1082887-1082498)
	415-800, gnl\|Hg17\|chr15 (76127111-76126700)