Non-Coding RNA Search

Utr1-UTR01H030094

Sequence:


               
               TTTAAAAAGAAATACATAAGTACATATATTTATGTAAAAAAATTGATTGGTATGTAGTTT
TAAATAAACATTTCCAggagttcccgttgtggctcagtggttaacgaacccggctagcat
ccatgaggacgcaggttcaatccctggcctcactcactgggttaaggatccggcactgcc
atgagctgtggcgtaggtctcagacacggctcggatcccgccttgctgtggctgtggcgt
aggccagaggctacagctccaattcaacccctagcctgggaacctccgtatgatgccggt
gcagccctgaaaagacAAAAAAAAAAAAAAAAAAAATTCCAAAATGGAATTAAAACTCTT
CTCTTTCTTAGAGTGTCATATCTCAAGCTGTGCCTGTAAAAAAAAAAAAATCCCTGCACT
TATATCAGTTATGAAGGTCAATGACTAAAATGTGTTAATATCTTGAACCCTAACTTTGCT
TCTATTCAATAAACAAAGATCTTTCCTAGTATTACATAGAGGGAGTGAAATTGAGACCCT
AAAGTCCAAATAATTCAGTCAGTTAAAACTTTGTAAAATTGACGTGGCTTTAATTTCTCA
AATGGAAAAGCAAGTAATTGAATTGTGGGAAATGTGCTGGTCTCCAGTTTCAAGAAACAG
TACAGCACAAAGACCTGGCATTCTGGCTGAAGAGCTGTAATAATAAACAGAAATTTGAAA
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAAAGAAATACATAAGTACATATATTTATGTAAAAAAATTGATTGGTATGTAGTTT
TAAATAAACATTTCCAggagttcccgttgtggctcagtggttaacgaacccggctagcat
ccatgaggacgcaggttcaatccctggcctcactcactgggttaaggatccggcactgcc
atgagctgtggcgtaggtctcagacacggctcggatcccgccttgctgtggctgtggcgt
aggccagaggctacagctccaattcaacccctagcctgggaacctccgtatgatgccggt
gcagccctgaaaagacAAAAAAAAAAAAAAAAAAAATTCCAAAATGGAATTAAAACTCTT
CTCTTTCTTAGAGTGTCATATCTCAAGCTGTGCCTGTAAAAAAAAAAAAATCCCTGCACT
TATATCAGTTATGAAGGTCAATGACTAAAATGTGTTAATATCTTGAACCCTAACTTTGCT
TCTATTCAATAAACAAAGATCTTTCCTAGTATTACATAGAGGGAGTGAAATTGAGACCCT
AAAGTCCAAATAATTCAGTCAGTTAAAACTTTGTAAAATTGACGTGGCTTTAATTTCTCA
AATGGAAAAGCAAGTAATTGAATTGTGGGAAATGTGCTGGTCTCCAGTTTCAAGAAACAG
TACAGCACAAAGACCTGGCATTCTGGCTGAAGAGCTGTAATAATAAACAGAAATTTGAAA
A

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               482-641, + strand, RNAz p=0.905617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-641, + strand, RNAz p=0.905617

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               535-605, + strand, RNAmicro p=0.981308
               

               
               536-606, - strand, RNAmicro p=0.905196

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               535-605, + strand, RNAmicro p=0.981308
               

               
               536-606, - strand, RNAmicro p=0.905196

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               327-721, gnl|bosTau2|chr12 (8320203-8319817)
               

               
               327-721, gnl|Hg17|chr13 (49498131-49497747)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               327-721, gnl|bosTau2|chr12 (8320203-8319817)
               

               
               327-721, gnl|Hg17|chr13 (49498131-49497747)

	535-605, + strand, RNAmicro p=0.981308
	536-606, - strand, RNAmicro p=0.905196

	327-721, gnl\|bosTau2\|chr12 (8320203-8319817)
	327-721, gnl\|Hg17\|chr13 (49498131-49497747)