Non-Coding RNA Search

Utr1-UTR01H070083

Sequence:


               
               ATCGATTTAAAAGGTGTTATATGTCAGATTTTAAAAGGCGCAATTTAAAATGCCAGACTT
GTTTTGACCCCGACCACGGGGTCTGGCATTACCTTCTGGCCCCGGCTTCGACGTCTTTCC
CACAGCTGGGGAGTTGCAGTTAGCTGTGTAGATAGCGCAAGGGCCGTGCAGTGGGTTAGA
ATCCGCTTTGCGTGTCACGGATCTCATTGAGACACAGCCTTCCCTTTGCTCTCTGGTTGA
GGCGGAATGGGCGAGGCCAGGTAGCACGACTCTAGCTGCTCTCATCTGCAGTCGCCTTGT
CTAGCAAACCGTCAGGGTTGTGTGGCCTCTGAGCGGAGGGGCGGTGCTGAGTGCTGGGCC
TCGCAGGGGAGCTGTCGAGTCAGTGGCAGCTCTGCGTCAGGCCGGGACTCTTTTCTTTCT
GTCTAAAGTTCTTCCCGACCCGTCATCCTGTGGCTTTGCGTCCCTCAGCTTACTCTCCAT
GTCGCTTTTAAACTAAAGGCTGAGTCTTCACACTTTTTCTTCAGTCGTGTCCCTGGGCCC
CGCTGTTTGATGGAATTTGTCGAGGACAGGCAGTGGCAGCTGGGGTGCAGAGTTTTCTAA
GAAGCACATCTGTTCTCTTCCAGCTGTTTCCTTCATGGCTTAATACCAAACAGGTCTCTT
GGCTACTTGGAACCTTCTTGCTCAGTACAAATTGTTCTGGCGAGTCACAGAGTTGGCCTC
AAACATGCGTGTGCCTGCTGTCNGTGGGCACAAAGGGTTAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGATTTAAAAGGTGTTATATGTCAGATTTTAAAAGGCGCAATTTAAAATGCCAGACTT
GTTTTGACCCCGACCACGGGGTCTGGCATTACCTTCTGGCCCCGGCTTCGACGTCTTTCC
CACAGCTGGGGAGTTGCAGTTAGCTGTGTAGATAGCGCAAGGGCCGTGCAGTGGGTTAGA
ATCCGCTTTGCGTGTCACGGATCTCATTGAGACACAGCCTTCCCTTTGCTCTCTGGTTGA
GGCGGAATGGGCGAGGCCAGGTAGCACGACTCTAGCTGCTCTCATCTGCAGTCGCCTTGT
CTAGCAAACCGTCAGGGTTGTGTGGCCTCTGAGCGGAGGGGCGGTGCTGAGTGCTGGGCC
TCGCAGGGGAGCTGTCGAGTCAGTGGCAGCTCTGCGTCAGGCCGGGACTCTTTTCTTTCT
GTCTAAAGTTCTTCCCGACCCGTCATCCTGTGGCTTTGCGTCCCTCAGCTTACTCTCCAT
GTCGCTTTTAAACTAAAGGCTGAGTCTTCACACTTTTTCTTCAGTCGTGTCCCTGGGCCC
CGCTGTTTGATGGAATTTGTCGAGGACAGGCAGTGGCAGCTGGGGTGCAGAGTTTTCTAA
GAAGCACATCTGTTCTCTTCCAGCTGTTTCCTTCATGGCTTAATACCAAACAGGTCTCTT
GGCTACTTGGAACCTTCTTGCTCAGTACAAATTGTTCTGGCGAGTCACAGAGTTGGCCTC
AAACATGCGTGTGCCTGCTGTCNGTGGGCACAAAGGGTTAAGCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               563-681, - strand, RNAz p=0.512962

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               563-681, - strand, RNAz p=0.512962

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               561-649, + strand, RNAmicro p=0.991193

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               561-649, + strand, RNAmicro p=0.991193

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-301, gnl|bosTau2|chr16 (22663426-22663134)
               

               
               6-301, gnl|Hg17|chr1 (10595147-10595944)
               

               
               6-301, gnl|Mm7|chr4 (147972822-147972293)
               


               
               327-761, gnl|bosTau2|chr16 (22663130-22662701)
               

               
               327-761, gnl|Hg17|chr1 (10595948-10596386)
               

               
               327-761, gnl|Mm7|chr4 (147972289-147971879)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-301, gnl|bosTau2|chr16 (22663426-22663134)
               

               
               6-301, gnl|Hg17|chr1 (10595147-10595944)
               

               
               6-301, gnl|Mm7|chr4 (147972822-147972293)
               


               
               327-761, gnl|bosTau2|chr16 (22663130-22662701)
               

               
               327-761, gnl|Hg17|chr1 (10595948-10596386)
               

               
               327-761, gnl|Mm7|chr4 (147972289-147971879)

	6-301, gnl\|bosTau2\|chr16 (22663426-22663134)
	6-301, gnl\|Hg17\|chr1 (10595147-10595944)
	6-301, gnl\|Mm7\|chr4 (147972822-147972293)

	327-761, gnl\|bosTau2\|chr16 (22663130-22662701)
	327-761, gnl\|Hg17\|chr1 (10595948-10596386)
	327-761, gnl\|Mm7\|chr4 (147972289-147971879)