Non-Coding RNA Search

Utr2-C0001779_E16

Sequence:


               
               GGAGGAAGACATTACTTTGTGTCTCTCCTCCTGGGTTTTATAATCTGTGAAGAATAACCC
ATTTTTTTGGAACTCTGGTATTATAGACATGTTTATTTTGTCATCAGTAATAGTGATTCG
GTTTAACTGTTTGTTTCTCACTGTGTTGTTCTACTTAGAAGAAGACACGGTAGGATTGTG
AGTTTTTATCTAACTTTGGACCCAGTGAGATGACCAGTGTGTTCCAGATAAAGAAAAAGA
GTGTTCTAAAATCATAAACCAAATAGAGATCCTACCCGACCTTAATTTCTTGCACTTCTT
CTATTCTCACCCACATTTCCCCTTGTAACTTGTGGAATTGACACTTCGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAAGACATTACTTTGTGTCTCTCCTCCTGGGTTTTATAATCTGTGAAGAATAACCC
ATTTTTTTGGAACTCTGGTATTATAGACATGTTTATTTTGTCATCAGTAATAGTGATTCG
GTTTAACTGTTTGTTTCTCACTGTGTTGTTCTACTTAGAAGAAGACACGGTAGGATTGTG
AGTTTTTATCTAACTTTGGACCCAGTGAGATGACCAGTGTGTTCCAGATAAAGAAAAAGA
GTGTTCTAAAATCATAAACCAAATAGAGATCCTACCCGACCTTAATTTCTTGCACTTCTT
CTATTCTCACCCACATTTCCCCTTGTAACTTGTGGAATTGACACTTCGGGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               215-329, - strand, RNAz p=0.875198

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-329, - strand, RNAz p=0.875198

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-350, gnl|bosTau2|chrX (10780000-10779662)
               

               
               3-350, gnl|canFam2|chrX (119354620-119354841)
               

               
               3-350, gnl|dasNov1|scaffold_9878 (36694-36478)
               

               
               3-350, gnl|echTel1|scaffold_175943 (2552-2767)
               

               
               3-350, gnl|hg17|chrX (146735324-146735547)
               

               
               3-350, gnl|Hg17|chrX (146735323-146735671)
               

               
               3-350, gnl|loxAfr1|scaffold_10062 (12120-11895)
               

               
               3-350, gnl|mm7|chrX (64109549-64109831)
               

               
               3-350, gnl|Mm7|chrX (64109548-64110029)
               

               
               3-350, gnl|oryCun1|scaffold_183357 (18725-18504)
               

               
               3-350, gnl|rheMac2|chrX (146059284-146059507)
               

               
               3-350, gnl|rn3|chrX (154864245-154864531)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-350, gnl|bosTau2|chrX (10780000-10779662)
               

               
               3-350, gnl|canFam2|chrX (119354620-119354841)
               

               
               3-350, gnl|dasNov1|scaffold_9878 (36694-36478)
               

               
               3-350, gnl|echTel1|scaffold_175943 (2552-2767)
               

               
               3-350, gnl|hg17|chrX (146735324-146735547)
               

               
               3-350, gnl|Hg17|chrX (146735323-146735671)
               

               
               3-350, gnl|loxAfr1|scaffold_10062 (12120-11895)
               

               
               3-350, gnl|mm7|chrX (64109549-64109831)
               

               
               3-350, gnl|Mm7|chrX (64109548-64110029)
               

               
               3-350, gnl|oryCun1|scaffold_183357 (18725-18504)
               

               
               3-350, gnl|rheMac2|chrX (146059284-146059507)
               

               
               3-350, gnl|rn3|chrX (154864245-154864531)

	3-350, gnl\|bosTau2\|chrX (10780000-10779662)
	3-350, gnl\|canFam2\|chrX (119354620-119354841)
	3-350, gnl\|dasNov1\|scaffold_9878 (36694-36478)
	3-350, gnl\|echTel1\|scaffold_175943 (2552-2767)
	3-350, gnl\|hg17\|chrX (146735324-146735547)
	3-350, gnl\|Hg17\|chrX (146735323-146735671)
	3-350, gnl\|loxAfr1\|scaffold_10062 (12120-11895)
	3-350, gnl\|mm7\|chrX (64109549-64109831)
	3-350, gnl\|Mm7\|chrX (64109548-64110029)
	3-350, gnl\|oryCun1\|scaffold_183357 (18725-18504)
	3-350, gnl\|rheMac2\|chrX (146059284-146059507)
	3-350, gnl\|rn3\|chrX (154864245-154864531)