Non-Coding RNA Search

Utr2-C0001780_P23

Sequence:


               
               GCCGCGGGATCTCCGGTCTCCAGGAGAACTTGATCTTTATGTTACATCCTCTGGGTGGAG
GTGGCCATTTTTCCTCCTGCCATGCTGGAGGACTCCCTTTTAGAGGTTGAGCCCACCTTG
CAGGGAACCAGAAACATAGAAGAGAAGCAAAAACTGCTTTTTAGGAGAAAAGTAGCCAAA
TTGGAATCCTTTCTTCTTTAGGGCAGACTCTTATGCCCTAGCAGGTGTAAAAGGGAAAAG
AATTCTCAGTGCTTCATCCCTCTGAAAGCAAAGAAACTCGGGGTCTATTTAGCATCAGCT
AAAGGAATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCGGGATCTCCGGTCTCCAGGAGAACTTGATCTTTATGTTACATCCTCTGGGTGGAG
GTGGCCATTTTTCCTCCTGCCATGCTGGAGGACTCCCTTTTAGAGGTTGAGCCCACCTTG
CAGGGAACCAGAAACATAGAAGAGAAGCAAAAACTGCTTTTTAGGAGAAAAGTAGCCAAA
TTGGAATCCTTTCTTCTTTAGGGCAGACTCTTATGCCCTAGCAGGTGTAAAAGGGAAAAG
AATTCTCAGTGCTTCATCCCTCTGAAAGCAAAGAAACTCGGGGTCTATTTAGCATCAGCT
AAAGGAATCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               36-149, - strand, RNAz p=0.555513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-149, - strand, RNAz p=0.555513

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               24-312, gnl|bosTau2|chr22 (8031225-8031508)
               

               
               24-312, gnl|canFam2|chr23 (9531099-9531518)
               

               
               24-312, gnl|dasNov1|scaffold_3730 (9071-8632)
               

               
               24-312, gnl|echTel1|scaffold_314109 (44536-44133)
               

               
               24-312, gnl|hg17|chr3 (36563515-36563929)
               

               
               24-312, gnl|Hg17|chr3 (36563659-36563940)
               

               
               24-312, gnl|loxAfr1|scaffold_8642 (66687-67162)
               

               
               24-312, gnl|mm7|chr9 (111259709-111259327)
               

               
               24-312, gnl|Mm7|chr9 (111259565-111259314)
               

               
               24-312, gnl|oryCun1|scaffold_209638 (2414-2801)
               

               
               24-312, gnl|panTro1|chr2 (37692118-37692532)
               

               
               24-312, gnl|rheMac2|chr2 (178961904-178962317)
               

               
               24-312, gnl|rn3|chr8 (115980804-115980385)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-312, gnl|bosTau2|chr22 (8031225-8031508)
               

               
               24-312, gnl|canFam2|chr23 (9531099-9531518)
               

               
               24-312, gnl|dasNov1|scaffold_3730 (9071-8632)
               

               
               24-312, gnl|echTel1|scaffold_314109 (44536-44133)
               

               
               24-312, gnl|hg17|chr3 (36563515-36563929)
               

               
               24-312, gnl|Hg17|chr3 (36563659-36563940)
               

               
               24-312, gnl|loxAfr1|scaffold_8642 (66687-67162)
               

               
               24-312, gnl|mm7|chr9 (111259709-111259327)
               

               
               24-312, gnl|Mm7|chr9 (111259565-111259314)
               

               
               24-312, gnl|oryCun1|scaffold_209638 (2414-2801)
               

               
               24-312, gnl|panTro1|chr2 (37692118-37692532)
               

               
               24-312, gnl|rheMac2|chr2 (178961904-178962317)
               

               
               24-312, gnl|rn3|chr8 (115980804-115980385)

	24-312, gnl\|bosTau2\|chr22 (8031225-8031508)
	24-312, gnl\|canFam2\|chr23 (9531099-9531518)
	24-312, gnl\|dasNov1\|scaffold_3730 (9071-8632)
	24-312, gnl\|echTel1\|scaffold_314109 (44536-44133)
	24-312, gnl\|hg17\|chr3 (36563515-36563929)
	24-312, gnl\|Hg17\|chr3 (36563659-36563940)
	24-312, gnl\|loxAfr1\|scaffold_8642 (66687-67162)
	24-312, gnl\|mm7\|chr9 (111259709-111259327)
	24-312, gnl\|Mm7\|chr9 (111259565-111259314)
	24-312, gnl\|oryCun1\|scaffold_209638 (2414-2801)
	24-312, gnl\|panTro1\|chr2 (37692118-37692532)
	24-312, gnl\|rheMac2\|chr2 (178961904-178962317)
	24-312, gnl\|rn3\|chr8 (115980804-115980385)