Non-Coding RNA Search

Utr2-C0001795_E14

Sequence:


               
               GTTGAACTGCTGTTATTATTTCTACATCCAGAGCAACGGTAGCTTTGGTTACATGGTTAA
CAGCAAGTTGGAGGTGGTGGGATATAGCGGGATTGAGGGGGAAGAGCCTGGGACTATGAG
CCAGCAGACCTGGGTCCAAGTCCTGGCTCTACTCGAACTGACTAGCTCTGTGATCTTAGT
CAGCTCAACAAGCCTGGGGAATAAGCCCACCTATCTCATGTGGCCCTTGTTGAGCTCAAA
GGAGACAAAGCCCGGCAGACAGCCAGCTCGTTGTCCGCCTCTCAGAGGATGTCCCGCTAC
AGGGAGGTTTCCGTCTGCCTCTGCAGTCATCAGTGCGGTCCACGCGGAAGGTGCTTCTCC
TTTCTGATGCTGTTACTCCGCACTTCTGGCCATGTCACGTGGTCCCTGGCCTACAACCGC
ACGTCAGTCTGTGGCTCCACGGTGGCACATGAAAACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAACTGCTGTTATTATTTCTACATCCAGAGCAACGGTAGCTTTGGTTACATGGTTAA
CAGCAAGTTGGAGGTGGTGGGATATAGCGGGATTGAGGGGGAAGAGCCTGGGACTATGAG
CCAGCAGACCTGGGTCCAAGTCCTGGCTCTACTCGAACTGACTAGCTCTGTGATCTTAGT
CAGCTCAACAAGCCTGGGGAATAAGCCCACCTATCTCATGTGGCCCTTGTTGAGCTCAAA
GGAGACAAAGCCCGGCAGACAGCCAGCTCGTTGTCCGCCTCTCAGAGGATGTCCCGCTAC
AGGGAGGTTTCCGTCTGCCTCTGCAGTCATCAGTGCGGTCCACGCGGAAGGTGCTTCTCC
TTTCTGATGCTGTTACTCCGCACTTCTGGCCATGTCACGTGGTCCCTGGCCTACAACCGC
ACGTCAGTCTGTGGCTCCACGGTGGCACATGAAAACTTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-197, - strand, RNAz p=0.990367
               

               
               111-221, - strand, RNAz p=0.887184

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-197, - strand, RNAz p=0.990367
               

               
               111-221, - strand, RNAz p=0.887184

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               86-167, + strand, RNAmicro p=0.990422

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               86-167, + strand, RNAmicro p=0.990422

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-460, gnl|bosTau2|chr13 (44302822-44303267)
               

               
               2-460, gnl|canFam2|chr24 (27954770-27955095)
               

               
               2-460, gnl|echTel1|scaffold_280321 (2968-2641)
               

               
               2-460, gnl|hg17|chr20 (34213598-34213922)
               

               
               2-460, gnl|Hg17|chr20 (34213641-34214101)
               

               
               2-460, gnl|loxAfr1|scaffold_29514 (849-525)
               

               
               2-460, gnl|mm7|chr2 (156223634-156223931)
               

               
               2-460, gnl|Mm7|chr2 (156223680-156224101)
               

               
               2-460, gnl|oryCun1|scaffold_211721 (55065-54770)
               

               
               2-460, gnl|panTro1|chr21 (36441398-36441722)
               

               
               2-460, gnl|rheMac2|chr10 (28358944-28358620)
               

               
               2-460, gnl|rn3|chr3 (146790712-146791005)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-460, gnl|bosTau2|chr13 (44302822-44303267)
               

               
               2-460, gnl|canFam2|chr24 (27954770-27955095)
               

               
               2-460, gnl|echTel1|scaffold_280321 (2968-2641)
               

               
               2-460, gnl|hg17|chr20 (34213598-34213922)
               

               
               2-460, gnl|Hg17|chr20 (34213641-34214101)
               

               
               2-460, gnl|loxAfr1|scaffold_29514 (849-525)
               

               
               2-460, gnl|mm7|chr2 (156223634-156223931)
               

               
               2-460, gnl|Mm7|chr2 (156223680-156224101)
               

               
               2-460, gnl|oryCun1|scaffold_211721 (55065-54770)
               

               
               2-460, gnl|panTro1|chr21 (36441398-36441722)
               

               
               2-460, gnl|rheMac2|chr10 (28358944-28358620)
               

               
               2-460, gnl|rn3|chr3 (146790712-146791005)

	80-197, - strand, RNAz p=0.990367
	111-221, - strand, RNAz p=0.887184

	2-460, gnl\|bosTau2\|chr13 (44302822-44303267)
	2-460, gnl\|canFam2\|chr24 (27954770-27955095)
	2-460, gnl\|echTel1\|scaffold_280321 (2968-2641)
	2-460, gnl\|hg17\|chr20 (34213598-34213922)
	2-460, gnl\|Hg17\|chr20 (34213641-34214101)
	2-460, gnl\|loxAfr1\|scaffold_29514 (849-525)
	2-460, gnl\|mm7\|chr2 (156223634-156223931)
	2-460, gnl\|Mm7\|chr2 (156223680-156224101)
	2-460, gnl\|oryCun1\|scaffold_211721 (55065-54770)
	2-460, gnl\|panTro1\|chr21 (36441398-36441722)
	2-460, gnl\|rheMac2\|chr10 (28358944-28358620)
	2-460, gnl\|rn3\|chr3 (146790712-146791005)