Non-Coding RNA Search

Utr2-C0001795_L05

Sequence:


               
               CTGACCTCTCAGCACCCCCGGCTCTGATTCCGGCTTCCGTGTCCGAAGAGAGCTCGCCTT
CTACTGTTCCTGCCTGCCTGTCTTTGATTCGCTGGGCCTCCATTGTCCCAGTGGAAAAAC
GGGGTTACACTTGGCCTTTCTCAAGGCACGCTTGGAGTTGGATCGTTTCTTAAACTTCCA
GTTTAGAATCCAGCCCCAGCTTGGAGCCTATACTGAACAGTGTACCCTTTCTAAAGGTCT
TTCTAAGCTATACGAATCCTGCTGGAGATACCCCAGCCCCATCCCCCATCAGCCTGTCCC
TCTGCCAGCAGCTGGACAGCAGCTGGGAGAAGGAACCAGAACCATCTGTCTGCGCCTTGA
GAGGCGTCTGCCAAAAGGCACCTGCGACCACACACGGGGCTCTCTGGTCCACCTGGGGCC
ATTCTAGCCTCTTTCGAGTGACTTTTGGAAATCAACTTTTTTTTTTTTTTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACCTCTCAGCACCCCCGGCTCTGATTCCGGCTTCCGTGTCCGAAGAGAGCTCGCCTT
CTACTGTTCCTGCCTGCCTGTCTTTGATTCGCTGGGCCTCCATTGTCCCAGTGGAAAAAC
GGGGTTACACTTGGCCTTTCTCAAGGCACGCTTGGAGTTGGATCGTTTCTTAAACTTCCA
GTTTAGAATCCAGCCCCAGCTTGGAGCCTATACTGAACAGTGTACCCTTTCTAAAGGTCT
TTCTAAGCTATACGAATCCTGCTGGAGATACCCCAGCCCCATCCCCCATCAGCCTGTCCC
TCTGCCAGCAGCTGGACAGCAGCTGGGAGAAGGAACCAGAACCATCTGTCTGCGCCTTGA
GAGGCGTCTGCCAAAAGGCACCTGCGACCACACACGGGGCTCTCTGGTCCACCTGGGGCC
ATTCTAGCCTCTTTCGAGTGACTTTTGGAAATCAACTTTTTTTTTTTTTTTCATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               63-204, + strand, RNAz p=0.93982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               63-204, + strand, RNAz p=0.93982

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-467, gnl|bosTau2|chr13 (55509801-55510273)
               

               
               1-467, gnl|canFam2|chr24 (35606556-35607245)
               

               
               1-467, gnl|dasNov1|scaffold_13470 (42749-42055)
               

               
               1-467, gnl|hg17|chr20 (43388390-43389149)
               

               
               1-467, gnl|Hg17|chr20 (43389222-43388739)
               

               
               1-467, gnl|loxAfr1|scaffold_2855 (80106-79407)
               

               
               1-467, gnl|mm7|chr2 (164165823-164166526)
               

               
               1-467, gnl|Mm7|chr2 (164166644-164166125)
               

               
               1-467, gnl|monDom2|scaffold_1 (156364392-156363520)
               

               
               1-467, gnl|oryCun1|scaffold_181861 (7287-6587)
               

               
               1-467, gnl|panTro1|chr21 (45873676-45874427)
               

               
               1-467, gnl|rheMac2|chr10 (19127191-19126432)
               

               
               1-467, gnl|rn3|chr3 (155353091-155353746)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-467, gnl|bosTau2|chr13 (55509801-55510273)
               

               
               1-467, gnl|canFam2|chr24 (35606556-35607245)
               

               
               1-467, gnl|dasNov1|scaffold_13470 (42749-42055)
               

               
               1-467, gnl|hg17|chr20 (43388390-43389149)
               

               
               1-467, gnl|Hg17|chr20 (43389222-43388739)
               

               
               1-467, gnl|loxAfr1|scaffold_2855 (80106-79407)
               

               
               1-467, gnl|mm7|chr2 (164165823-164166526)
               

               
               1-467, gnl|Mm7|chr2 (164166644-164166125)
               

               
               1-467, gnl|monDom2|scaffold_1 (156364392-156363520)
               

               
               1-467, gnl|oryCun1|scaffold_181861 (7287-6587)
               

               
               1-467, gnl|panTro1|chr21 (45873676-45874427)
               

               
               1-467, gnl|rheMac2|chr10 (19127191-19126432)
               

               
               1-467, gnl|rn3|chr3 (155353091-155353746)

	1-467, gnl\|bosTau2\|chr13 (55509801-55510273)
	1-467, gnl\|canFam2\|chr24 (35606556-35607245)
	1-467, gnl\|dasNov1\|scaffold_13470 (42749-42055)
	1-467, gnl\|hg17\|chr20 (43388390-43389149)
	1-467, gnl\|Hg17\|chr20 (43389222-43388739)
	1-467, gnl\|loxAfr1\|scaffold_2855 (80106-79407)
	1-467, gnl\|mm7\|chr2 (164165823-164166526)
	1-467, gnl\|Mm7\|chr2 (164166644-164166125)
	1-467, gnl\|monDom2\|scaffold_1 (156364392-156363520)
	1-467, gnl\|oryCun1\|scaffold_181861 (7287-6587)
	1-467, gnl\|panTro1\|chr21 (45873676-45874427)
	1-467, gnl\|rheMac2\|chr10 (19127191-19126432)
	1-467, gnl\|rn3\|chr3 (155353091-155353746)