Non-Coding RNA Search

Utr2-C0001796_K14

Sequence:


               
               GCTAACGTGGACTTCTCCCACTTACTGGGCTTTCTTCCTCTCAACCTGCCCCCATGTAAC
CCTCCCGGGGCCACTGGAGGCCTGGTTATGGGCTACTCCCAGGCCGAGGCACAGCCCCTG
CTCACCACTTTGCAAGCTCAGCCTCAAGATTCCCCAGGAGCTGGGGGACCCCTGAACTTT
GGGCCTCTACACTCCTTGCCTCCTGTCTTCACCTCTGGCCTGAGCACCACCACCCTGCCT
CGTTTCCACCAGGCATTCCAGTAGCCCCGAGAAGGCCTTCAGCTCAGTCTCGGCGCTGTC
AGGGAGCCTCAGTACCTACCCTATCTGCATCCCCTGTGAAGGCAGCTGAGCTTTCAGAGC
TGGGTTCAAAAAGAAAAATTCCAGTATCTGTATGGAGCACTTGGTTTGAGGGCTCAGACT
CCAGGATCAGTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAACGTGGACTTCTCCCACTTACTGGGCTTTCTTCCTCTCAACCTGCCCCCATGTAAC
CCTCCCGGGGCCACTGGAGGCCTGGTTATGGGCTACTCCCAGGCCGAGGCACAGCCCCTG
CTCACCACTTTGCAAGCTCAGCCTCAAGATTCCCCAGGAGCTGGGGGACCCCTGAACTTT
GGGCCTCTACACTCCTTGCCTCCTGTCTTCACCTCTGGCCTGAGCACCACCACCCTGCCT
CGTTTCCACCAGGCATTCCAGTAGCCCCGAGAAGGCCTTCAGCTCAGTCTCGGCGCTGTC
AGGGAGCCTCAGTACCTACCCTATCTGCATCCCCTGTGAAGGCAGCTGAGCTTTCAGAGC
TGGGTTCAAAAAGAAAAATTCCAGTATCTGTATGGAGCACTTGGTTTGAGGGCTCAGACT
CCAGGATCAGTTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-161, - strand, RNAz p=0.998147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-161, - strand, RNAz p=0.998147

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               1-161, BW965828 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW965828.1|), blast E-value=0, identity=100% 
               

               
               1-161, AGENCOURT_6727036 NIH_MGC_100 Homo sapiens cDNA clone IMAGE 
(gb|BM928678.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, AGENCOURT_8614893 NIH_MGC_100 Homo sapiens cDNA clone IMAGE 
(gb|BQ876732.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, DG8-238c17 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO602295.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, DG8-62i3 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO607533.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, DG33-11n13 DG33-aorta Canis familiaris cDNA 3', mRNA sequence 
(gb|CO666052.1|), blast E-value=0, identity=94.41%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-161, BW965828 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW965828.1|), blast E-value=0, identity=100% 
               

               
               1-161, AGENCOURT_6727036 NIH_MGC_100 Homo sapiens cDNA clone IMAGE 
(gb|BM928678.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, AGENCOURT_8614893 NIH_MGC_100 Homo sapiens cDNA clone IMAGE 
(gb|BQ876732.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, DG8-238c17 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO602295.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, DG8-62i3 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO607533.1|), blast E-value=0, identity=93.79% 
               

               
               1-161, DG33-11n13 DG33-aorta Canis familiaris cDNA 3', mRNA sequence 
(gb|CO666052.1|), blast E-value=0, identity=94.41%

Aligned organism(s): 35 entry(ies)

More info

Aligned organism(s): 35 entry(ies)

Help | Less info


               
               1-161, gnl|bosTau2|chr13 (42345187-42345347)
               

               
               1-161, gnl|canFam2|chr24 (24568017-24568231)
               

               
               1-161, gnl|canFam2|chr24 (24568231-24568020)
               

               
               1-161, gnl|danRer3|chr15 (28234026-28233731)
               

               
               1-161, gnl|danRer3|chr15 (28233731-28234023)
               

               
               1-161, gnl|dasNov1|scaffold_24400 (14590-14804)
               

               
               1-161, gnl|dasNov1|scaffold_24400 (14804-14593)
               

               
               1-161, gnl|echTel1|scaffold_294956 (1347-1561)
               

               
               1-161, gnl|echTel1|scaffold_294956 (1561-1350)
               

               
               1-161, gnl|fr1|chrUn (272044508-272044192)
               

               
               1-161, gnl|fr1|chrUn (272044192-272044505)
               

               
               1-161, gnl|galGal2|chr20 (9703623-9703837)
               

               
               1-161, gnl|galGal2|chr20 (9703837-9703626)
               

               
               1-161, gnl|hg17|chr20 (30248017-30248231)
               

               
               1-161, gnl|Hg17|chr20 (30248179-30248019)
               

               
               1-161, gnl|hg17|chr4 (85523510-85523721)
               

               
               1-161, gnl|loxAfr1|scaffold_27064 (15060-14846)
               

               
               1-161, gnl|loxAfr1|scaffold_27064 (14846-15057)
               

               
               1-161, gnl|mm7|chr2 (152972447-152972661)
               

               
               1-161, gnl|mm7|chr2 (152972661-152972450)
               

               
               1-161, gnl|Mm7|chr2 (152972609-152972449)
               

               
               1-161, gnl|monDom2|scaffold_38 (859472-859258)
               

               
               1-161, gnl|monDom2|scaffold_38 (859258-859469)
               

               
               1-161, gnl|oryCun1|scaffold_191471 (20813-21027)
               

               
               1-161, gnl|oryCun1|scaffold_191471 (21027-20816)
               

               
               1-161, gnl|panTro1|chr21 (31944051-31944265)
               

               
               1-161, gnl|panTro1|chr3 (48161375-48161164)
               

               
               1-161, gnl|rheMac2|chr10 (32379779-32379565)
               

               
               1-161, gnl|rheMac2|chr10 (32379565-32379776)
               

               
               1-161, gnl|rn3|chr3 (143488335-143488549)
               

               
               1-161, gnl|rn3|chr3 (143488549-143488338)
               

               
               1-161, gnl|tetNig1|chrUn_random (109850598-109850282)
               

               
               1-161, gnl|tetNig1|chrUn_random (109850282-109850595)
               

               
               1-161, gnl|xenTro1|scaffold_8 (2786731-2786945)
               

               
               1-161, gnl|xenTro1|scaffold_8 (2786945-2786735)

Aligned organism(s): 35 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr13 (42345187-42345347)
               

               
               1-161, gnl|canFam2|chr24 (24568017-24568231)
               

               
               1-161, gnl|canFam2|chr24 (24568231-24568020)
               

               
               1-161, gnl|danRer3|chr15 (28234026-28233731)
               

               
               1-161, gnl|danRer3|chr15 (28233731-28234023)
               

               
               1-161, gnl|dasNov1|scaffold_24400 (14590-14804)
               

               
               1-161, gnl|dasNov1|scaffold_24400 (14804-14593)
               

               
               1-161, gnl|echTel1|scaffold_294956 (1347-1561)
               

               
               1-161, gnl|echTel1|scaffold_294956 (1561-1350)
               

               
               1-161, gnl|fr1|chrUn (272044508-272044192)
               

               
               1-161, gnl|fr1|chrUn (272044192-272044505)
               

               
               1-161, gnl|galGal2|chr20 (9703623-9703837)
               

               
               1-161, gnl|galGal2|chr20 (9703837-9703626)
               

               
               1-161, gnl|hg17|chr20 (30248017-30248231)
               

               
               1-161, gnl|Hg17|chr20 (30248179-30248019)
               

               
               1-161, gnl|hg17|chr4 (85523510-85523721)
               

               
               1-161, gnl|loxAfr1|scaffold_27064 (15060-14846)
               

               
               1-161, gnl|loxAfr1|scaffold_27064 (14846-15057)
               

               
               1-161, gnl|mm7|chr2 (152972447-152972661)
               

               
               1-161, gnl|mm7|chr2 (152972661-152972450)
               

               
               1-161, gnl|Mm7|chr2 (152972609-152972449)
               

               
               1-161, gnl|monDom2|scaffold_38 (859472-859258)
               

               
               1-161, gnl|monDom2|scaffold_38 (859258-859469)
               

               
               1-161, gnl|oryCun1|scaffold_191471 (20813-21027)
               

               
               1-161, gnl|oryCun1|scaffold_191471 (21027-20816)
               

               
               1-161, gnl|panTro1|chr21 (31944051-31944265)
               

               
               1-161, gnl|panTro1|chr3 (48161375-48161164)
               

               
               1-161, gnl|rheMac2|chr10 (32379779-32379565)
               

               
               1-161, gnl|rheMac2|chr10 (32379565-32379776)
               

               
               1-161, gnl|rn3|chr3 (143488335-143488549)
               

               
               1-161, gnl|rn3|chr3 (143488549-143488338)
               

               
               1-161, gnl|tetNig1|chrUn_random (109850598-109850282)
               

               
               1-161, gnl|tetNig1|chrUn_random (109850282-109850595)
               

               
               1-161, gnl|xenTro1|scaffold_8 (2786731-2786945)
               

               
               1-161, gnl|xenTro1|scaffold_8 (2786945-2786735)

	1-161, BW965828 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BW965828.1\|), blast E-value=0, identity=100%
	1-161, AGENCOURT_6727036 NIH_MGC_100 Homo sapiens cDNA clone IMAGE (gb\|BM928678.1\|), blast E-value=0, identity=93.79%
	1-161, AGENCOURT_8614893 NIH_MGC_100 Homo sapiens cDNA clone IMAGE (gb\|BQ876732.1\|), blast E-value=0, identity=93.79%
	1-161, DG8-238c17 DG8-testis Canis familiaris cDNA 3', mRNA sequence (gb\|CO602295.1\|), blast E-value=0, identity=93.79%
	1-161, DG8-62i3 DG8-testis Canis familiaris cDNA 3', mRNA sequence (gb\|CO607533.1\|), blast E-value=0, identity=93.79%
	1-161, DG33-11n13 DG33-aorta Canis familiaris cDNA 3', mRNA sequence (gb\|CO666052.1\|), blast E-value=0, identity=94.41%

	1-161, gnl\|bosTau2\|chr13 (42345187-42345347)
	1-161, gnl\|canFam2\|chr24 (24568017-24568231)
	1-161, gnl\|canFam2\|chr24 (24568231-24568020)
	1-161, gnl\|danRer3\|chr15 (28234026-28233731)
	1-161, gnl\|danRer3\|chr15 (28233731-28234023)
	1-161, gnl\|dasNov1\|scaffold_24400 (14590-14804)
	1-161, gnl\|dasNov1\|scaffold_24400 (14804-14593)
	1-161, gnl\|echTel1\|scaffold_294956 (1347-1561)
	1-161, gnl\|echTel1\|scaffold_294956 (1561-1350)
	1-161, gnl\|fr1\|chrUn (272044508-272044192)
	1-161, gnl\|fr1\|chrUn (272044192-272044505)
	1-161, gnl\|galGal2\|chr20 (9703623-9703837)
	1-161, gnl\|galGal2\|chr20 (9703837-9703626)
	1-161, gnl\|hg17\|chr20 (30248017-30248231)
	1-161, gnl\|Hg17\|chr20 (30248179-30248019)
	1-161, gnl\|hg17\|chr4 (85523510-85523721)
	1-161, gnl\|loxAfr1\|scaffold_27064 (15060-14846)
	1-161, gnl\|loxAfr1\|scaffold_27064 (14846-15057)
	1-161, gnl\|mm7\|chr2 (152972447-152972661)
	1-161, gnl\|mm7\|chr2 (152972661-152972450)
	1-161, gnl\|Mm7\|chr2 (152972609-152972449)
	1-161, gnl\|monDom2\|scaffold_38 (859472-859258)
	1-161, gnl\|monDom2\|scaffold_38 (859258-859469)
	1-161, gnl\|oryCun1\|scaffold_191471 (20813-21027)
	1-161, gnl\|oryCun1\|scaffold_191471 (21027-20816)
	1-161, gnl\|panTro1\|chr21 (31944051-31944265)
	1-161, gnl\|panTro1\|chr3 (48161375-48161164)
	1-161, gnl\|rheMac2\|chr10 (32379779-32379565)
	1-161, gnl\|rheMac2\|chr10 (32379565-32379776)
	1-161, gnl\|rn3\|chr3 (143488335-143488549)
	1-161, gnl\|rn3\|chr3 (143488549-143488338)
	1-161, gnl\|tetNig1\|chrUn_random (109850598-109850282)
	1-161, gnl\|tetNig1\|chrUn_random (109850282-109850595)
	1-161, gnl\|xenTro1\|scaffold_8 (2786731-2786945)
	1-161, gnl\|xenTro1\|scaffold_8 (2786945-2786735)