Non-Coding RNA Search

Utr2-C0001797_J04

Sequence:


               
               ACCAAACACTGTATCTTGTCCTGGCTTGGAAACTGTTTGCATGCAAATGCAGGCCGCACC
AAGATTTGGGCCAATCAGATGCCAGAAATCTTCTTCCAAATGTATGCCTCGGATGCCTTC
TTTCTGAATCTGGGTGCTGCTCTCCTGAAGCTGTGCCAGCCATTTTGCAAACCCAGATCC
TCTCGGCTCCTCACCTTTAATCCCACTTACTGTGCTCTGAAGGAGTTGAATGATGAAGAA
CGAAAAATAAAAAATGTACACATGAGAGGTTTGGACAAAGAAACCTGTTTGATCCCAGCT
GTGCAGGAGCCAAAATTTCCCCAGAACTACAACCTCGTTACAGAGAACCTTGTCCTGACA
GAGTACACCTTGTACTTGGGATTTCACAGGTTGCATGATCAGATGGTAAAAATCAACCAA
AATCTGCATCGGCTGCAGATAGCCTGGCGGGATGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAAACACTGTATCTTGTCCTGGCTTGGAAACTGTTTGCATGCAAATGCAGGCCGCACC
AAGATTTGGGCCAATCAGATGCCAGAAATCTTCTTCCAAATGTATGCCTCGGATGCCTTC
TTTCTGAATCTGGGTGCTGCTCTCCTGAAGCTGTGCCAGCCATTTTGCAAACCCAGATCC
TCTCGGCTCCTCACCTTTAATCCCACTTACTGTGCTCTGAAGGAGTTGAATGATGAAGAA
CGAAAAATAAAAAATGTACACATGAGAGGTTTGGACAAAGAAACCTGTTTGATCCCAGCT
GTGCAGGAGCCAAAATTTCCCCAGAACTACAACCTCGTTACAGAGAACCTTGTCCTGACA
GAGTACACCTTGTACTTGGGATTTCACAGGTTGCATGATCAGATGGTAAAAATCAACCAA
AATCTGCATCGGCTGCAGATAGCCTGGCGGGATGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.898518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.898518

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-270, gnl|bosTau2|chr15 (15151302-15151033)
               

               
               1-270, gnl|canFam2|chr5 (18367246-18366959)
               

               
               1-270, gnl|danRer3|chr16 (16193444-16193162)
               

               
               1-270, gnl|dasNov1|scaffold_83451 (3448-3735)
               

               
               1-270, gnl|echTel1|scaffold_288668 (3075-3361)
               

               
               1-270, gnl|fr1|chrUn (124396600-124396879)
               

               
               1-270, gnl|galGal2|chr24 (4282185-4281900)
               

               
               1-270, gnl|hg17|chr11 (117750875-117751162)
               

               
               1-270, gnl|Hg17|chr11 (117750887-117751156)
               

               
               1-270, gnl|loxAfr1|scaffold_14592 (29168-28881)
               

               
               1-270, gnl|mm7|chr9 (44880810-44880522)
               

               
               1-270, gnl|Mm7|chr9 (44880796-44880527)
               

               
               1-270, gnl|monDom2|scaffold_2 (120313852-120313565)
               

               
               1-270, gnl|panTro1|chr9 (119758112-119758399)
               

               
               1-270, gnl|rheMac2|chr14 (116756978-116757265)
               

               
               1-270, gnl|rn3|chr8 (47910095-47909807)
               

               
               1-270, gnl|tetNig1|chr10 (10594808-10595092)
               

               
               1-270, gnl|xenTro1|scaffold_18 (556590-556308)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-270, gnl|bosTau2|chr15 (15151302-15151033)
               

               
               1-270, gnl|canFam2|chr5 (18367246-18366959)
               

               
               1-270, gnl|danRer3|chr16 (16193444-16193162)
               

               
               1-270, gnl|dasNov1|scaffold_83451 (3448-3735)
               

               
               1-270, gnl|echTel1|scaffold_288668 (3075-3361)
               

               
               1-270, gnl|fr1|chrUn (124396600-124396879)
               

               
               1-270, gnl|galGal2|chr24 (4282185-4281900)
               

               
               1-270, gnl|hg17|chr11 (117750875-117751162)
               

               
               1-270, gnl|Hg17|chr11 (117750887-117751156)
               

               
               1-270, gnl|loxAfr1|scaffold_14592 (29168-28881)
               

               
               1-270, gnl|mm7|chr9 (44880810-44880522)
               

               
               1-270, gnl|Mm7|chr9 (44880796-44880527)
               

               
               1-270, gnl|monDom2|scaffold_2 (120313852-120313565)
               

               
               1-270, gnl|panTro1|chr9 (119758112-119758399)
               

               
               1-270, gnl|rheMac2|chr14 (116756978-116757265)
               

               
               1-270, gnl|rn3|chr8 (47910095-47909807)
               

               
               1-270, gnl|tetNig1|chr10 (10594808-10595092)
               

               
               1-270, gnl|xenTro1|scaffold_18 (556590-556308)

	1-270, gnl\|bosTau2\|chr15 (15151302-15151033)
	1-270, gnl\|canFam2\|chr5 (18367246-18366959)
	1-270, gnl\|danRer3\|chr16 (16193444-16193162)
	1-270, gnl\|dasNov1\|scaffold_83451 (3448-3735)
	1-270, gnl\|echTel1\|scaffold_288668 (3075-3361)
	1-270, gnl\|fr1\|chrUn (124396600-124396879)
	1-270, gnl\|galGal2\|chr24 (4282185-4281900)
	1-270, gnl\|hg17\|chr11 (117750875-117751162)
	1-270, gnl\|Hg17\|chr11 (117750887-117751156)
	1-270, gnl\|loxAfr1\|scaffold_14592 (29168-28881)
	1-270, gnl\|mm7\|chr9 (44880810-44880522)
	1-270, gnl\|Mm7\|chr9 (44880796-44880527)
	1-270, gnl\|monDom2\|scaffold_2 (120313852-120313565)
	1-270, gnl\|panTro1\|chr9 (119758112-119758399)
	1-270, gnl\|rheMac2\|chr14 (116756978-116757265)
	1-270, gnl\|rn3\|chr8 (47910095-47909807)
	1-270, gnl\|tetNig1\|chr10 (10594808-10595092)
	1-270, gnl\|xenTro1\|scaffold_18 (556590-556308)