Utr2-C0001799_C19
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGAAGCTGAAAAGCGAATCCTGCAGGAGAAATTAGATCAGCCGGTCTCAGCTCCCCCA TCGCCTAGAGACATCTCCATGGAGATCGACTCTCCAGAAAACATGATGCGACACATCAGG TTTCTAAAGAATGAAGTGGAGAGGCTGAAGAAGCAACTGAGAGCTGCCCAGCTACAGCAT TCTGAGAAGATGGCACAGTACCTGGAGGAGGAGCGTCACATGAGGGAAGAGAACTTGAGG CTGCAGAGAAAGCTGCAGAGGGAGATGGAAAGAAGGGAGGCCCTCTGTCGGCAGCTCTCC GAGAGCGAGTCCAGCTTAGAGATGGACGACGAAAGGTATTTTAACGAGATGTCTGCCCAA GGATTAAGACCTCGCACTGTGTCTAGCCCGATCCCTTACACACCTTCTCCGAGTTCGAGC AGGCCCATATCACCTGGTCTCTCATATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGAAGCTGAAAAGCGAATCCTGCAGGAGAAATTAGATCAGCCGGTCTCAGCTCCCCCA TCGCCTAGAGACATCTCCATGGAGATCGACTCTCCAGAAAACATGATGCGACACATCAGG TTTCTAAAGAATGAAGTGGAGAGGCTGAAGAAGCAACTGAGAGCTGCCCAGCTACAGCAT TCTGAGAAGATGGCACAGTACCTGGAGGAGGAGCGTCACATGAGGGAAGAGAACTTGAGG CTGCAGAGAAAGCTGCAGAGGGAGATGGAAAGAAGGGAGGCCCTCTGTCGGCAGCTCTCC GAGAGCGAGTCCAGCTTAGAGATGGACGACGAAAGGTATTTTAACGAGATGTCTGCCCAA GGATTAAGACCTCGCACTGTGTCTAGCCCGATCCCTTACACACCTTCTCCGAGTTCGAGC AGGCCCATATCACCTGGTCTCTCATATG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 56-178, + strand, RNAz p=0.948511 | |
| 218-338, + strand, RNAz p=0.929174 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 56-178, + strand, RNAz p=0.948511 | |
| 218-338, + strand, RNAz p=0.929174 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 218-338, DA208699 BRAWH2 Homo sapiens cDNA clone BRAWH2016222 5', mRNA (dbj|DA208699.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DA599665 HSYRA2 Homo sapiens cDNA clone HSYRA2004566 5', mRNA (dbj|DA599665.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DA725554 NT2RI3 Homo sapiens cDNA clone NT2RI3007256 5', mRNA (dbj|DA725554.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DA806650 OCBBF3 Homo sapiens cDNA clone OCBBF3022083 5', mRNA (dbj|DA806650.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DB214428 TRACH3 Homo sapiens cDNA clone TRACH3002794 5', mRNA (dbj|DB214428.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, sh2P0048M19_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb|DY503921.1|), blast E-value=9.99967e-42, identity=93.39% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 218-338, DA208699 BRAWH2 Homo sapiens cDNA clone BRAWH2016222 5', mRNA (dbj|DA208699.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DA599665 HSYRA2 Homo sapiens cDNA clone HSYRA2004566 5', mRNA (dbj|DA599665.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DA725554 NT2RI3 Homo sapiens cDNA clone NT2RI3007256 5', mRNA (dbj|DA725554.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DA806650 OCBBF3 Homo sapiens cDNA clone OCBBF3022083 5', mRNA (dbj|DA806650.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, DB214428 TRACH3 Homo sapiens cDNA clone TRACH3002794 5', mRNA (dbj|DB214428.1|), blast E-value=3e-39, identity=92.56% | |
| 218-338, sh2P0048M19_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb|DY503921.1|), blast E-value=9.99967e-42, identity=93.39% |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 17-178, gnl|bosTau2|chr28 (11238669-11238830) | |
| 17-178, gnl|canFam2|chr4 (15194381-15194601) | |
| 17-178, gnl|danRer3|chr17 (21800220-21800390) | |
| 17-178, gnl|dasNov1|scaffold_5528 (4389-4169) | |
| 17-178, gnl|echTel1|scaffold_309232 (110000-109779) | |
| 17-178, gnl|fr1|chrUn (135967051-135966852) | |
| 17-178, gnl|galGal2|chr6 (8481627-8481412) | |
| 17-178, gnl|hg17|chr10 (61242376-61242596) | |
| 17-178, gnl|Hg17|chr10 (61242560-61242399) | |
| 17-178, gnl|loxAfr1|scaffold_4980 (89247-89468) | |
| 17-178, gnl|mm7|chr10 (69771476-69771263) | |
| 17-178, gnl|Mm7|chr10 (69771302-69771463) | |
| 17-178, gnl|monDom2|scaffold_67 (11431-11608) | |
| 17-178, gnl|oryCun1|scaffold_177544 (63473-63254) | |
| 17-178, gnl|panTro1|chr8 (62054799-62055019) | |
| 17-178, gnl|rheMac2|chr9 (77478109-77477889) | |
| 17-178, gnl|rn3|chr20 (19194019-19194225) | |
| 17-178, gnl|tetNig1|chrUn_random (9915363-9915540) | |
| 17-178, gnl|xenTro1|scaffold_201 (903760-903963) | |
| 179-338, gnl|bosTau2|chr28 (11244422-11244581) | |
| 179-338, gnl|canFam2|chr4 (15188773-15188947) | |
| 179-338, gnl|danRer3|chr17 (21798263-21798437) | |
| 179-338, gnl|fr1|chrUn (135968109-135967948) | |
| 179-338, gnl|galGal2|chr6 (8484843-8484670) | |
| 179-338, gnl|hg17|chr10 (61236677-61236851) | |
| 179-338, gnl|Hg17|chr10 (61236842-61236683) | |
| 179-338, gnl|loxAfr1|scaffold_4980 (82363-82537) | |
| 179-338, gnl|mm7|chr10 (69777389-69777215) | |
| 179-338, gnl|Mm7|chr10 (69777222-69777380) | |
| 179-338, gnl|monDom2|scaffold_67 (11129-11291) | |
| 179-338, gnl|oryCun1|scaffold_177544 (67999-67828) | |
| 179-338, gnl|panTro1|chr8 (62049110-62049284) | |
| 179-338, gnl|rheMac2|chr9 (77483814-77483640) | |
| 179-338, gnl|rn3|chr20 (19187930-19188104) | |
| 179-338, gnl|tetNig1|chrUn_random (9914960-9915126) | |
| 179-338, gnl|xenTro1|scaffold_201 (902628-902803) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-178, gnl|bosTau2|chr28 (11238669-11238830) | |
| 17-178, gnl|canFam2|chr4 (15194381-15194601) | |
| 17-178, gnl|danRer3|chr17 (21800220-21800390) | |
| 17-178, gnl|dasNov1|scaffold_5528 (4389-4169) | |
| 17-178, gnl|echTel1|scaffold_309232 (110000-109779) | |
| 17-178, gnl|fr1|chrUn (135967051-135966852) | |
| 17-178, gnl|galGal2|chr6 (8481627-8481412) | |
| 17-178, gnl|hg17|chr10 (61242376-61242596) | |
| 17-178, gnl|Hg17|chr10 (61242560-61242399) | |
| 17-178, gnl|loxAfr1|scaffold_4980 (89247-89468) | |
| 17-178, gnl|mm7|chr10 (69771476-69771263) | |
| 17-178, gnl|Mm7|chr10 (69771302-69771463) | |
| 17-178, gnl|monDom2|scaffold_67 (11431-11608) | |
| 17-178, gnl|oryCun1|scaffold_177544 (63473-63254) | |
| 17-178, gnl|panTro1|chr8 (62054799-62055019) | |
| 17-178, gnl|rheMac2|chr9 (77478109-77477889) | |
| 17-178, gnl|rn3|chr20 (19194019-19194225) | |
| 17-178, gnl|tetNig1|chrUn_random (9915363-9915540) | |
| 17-178, gnl|xenTro1|scaffold_201 (903760-903963) | |
| 179-338, gnl|bosTau2|chr28 (11244422-11244581) | |
| 179-338, gnl|canFam2|chr4 (15188773-15188947) | |
| 179-338, gnl|danRer3|chr17 (21798263-21798437) | |
| 179-338, gnl|fr1|chrUn (135968109-135967948) | |
| 179-338, gnl|galGal2|chr6 (8484843-8484670) | |
| 179-338, gnl|hg17|chr10 (61236677-61236851) | |
| 179-338, gnl|Hg17|chr10 (61236842-61236683) | |
| 179-338, gnl|loxAfr1|scaffold_4980 (82363-82537) | |
| 179-338, gnl|mm7|chr10 (69777389-69777215) | |
| 179-338, gnl|Mm7|chr10 (69777222-69777380) | |
| 179-338, gnl|monDom2|scaffold_67 (11129-11291) | |
| 179-338, gnl|oryCun1|scaffold_177544 (67999-67828) | |
| 179-338, gnl|panTro1|chr8 (62049110-62049284) | |
| 179-338, gnl|rheMac2|chr9 (77483814-77483640) | |
| 179-338, gnl|rn3|chr20 (19187930-19188104) | |
| 179-338, gnl|tetNig1|chrUn_random (9914960-9915126) | |
| 179-338, gnl|xenTro1|scaffold_201 (902628-902803) |