Non-Coding RNA Search

Utr2-C0001799_G10

Sequence:


               
               GAACATTTAAAATTGCTGTGGCTTCTAAAATATTTTCTATATTGAGACAATCTTCTTTAT
CTAATTATTTTCCAGGCAAATTTACTTAGAAGCATTTCCTGTCTGGGATGTATTTAATTT
TATCAGAGGAGCAGTCTCAGTTCTGTTCCTGGTAGTAAAGTCCATTGATGAATGCAGCCA
TTTATAAATACTGTCATTTTCTTTTAGAGTGGAGATTATTGAACCATTATAAAAACTTAT
GCATATTGATATTTATTTGAAGACAGTTTTAAAAAGTGGAAATGCATTTGTTAAAAAATT
AAATGCCTGAAGAGTCAGTAGAGTCTTGGAAACAGATAGTATCTTGTGTTCCATTGTATT
CCTTCTGCACAGTGTACATGTTGTTACAGTAGGTACTCAGTGGTATCTTGGTTCTATGTG
GATGTCTTTGGATCACACTCCCAGAATGAGCACTATTAAATGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACATTTAAAATTGCTGTGGCTTCTAAAATATTTTCTATATTGAGACAATCTTCTTTAT
CTAATTATTTTCCAGGCAAATTTACTTAGAAGCATTTCCTGTCTGGGATGTATTTAATTT
TATCAGAGGAGCAGTCTCAGTTCTGTTCCTGGTAGTAAAGTCCATTGATGAATGCAGCCA
TTTATAAATACTGTCATTTTCTTTTAGAGTGGAGATTATTGAACCATTATAAAAACTTAT
GCATATTGATATTTATTTGAAGACAGTTTTAAAAAGTGGAAATGCATTTGTTAAAAAATT
AAATGCCTGAAGAGTCAGTAGAGTCTTGGAAACAGATAGTATCTTGTGTTCCATTGTATT
CCTTCTGCACAGTGTACATGTTGTTACAGTAGGTACTCAGTGGTATCTTGGTTCTATGTG
GATGTCTTTGGATCACACTCCCAGAATGAGCACTATTAAATGTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-350, + strand, RNAz p=0.545617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-350, + strand, RNAz p=0.545617

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-452, gnl|bosTau2|chr17 (21208111-21208564)
               

               
               3-452, gnl|canFam2|chr15 (59272123-59272499)
               

               
               3-452, gnl|echTel1|scaffold_301222 (11006-10689)
               

               
               3-452, gnl|hg17|chr4 (160537004-160537388)
               

               
               3-452, gnl|Hg17|chr4 (160537110-160537561)
               

               
               3-452, gnl|loxAfr1|scaffold_14959 (6691-7077)
               

               
               3-452, gnl|oryCun1|scaffold_176341 (25584-25208)
               

               
               3-452, gnl|panTro1|chr3 (177982697-177983081)
               

               
               3-452, gnl|rheMac2|chr5 (151427110-151427493)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-452, gnl|bosTau2|chr17 (21208111-21208564)
               

               
               3-452, gnl|canFam2|chr15 (59272123-59272499)
               

               
               3-452, gnl|echTel1|scaffold_301222 (11006-10689)
               

               
               3-452, gnl|hg17|chr4 (160537004-160537388)
               

               
               3-452, gnl|Hg17|chr4 (160537110-160537561)
               

               
               3-452, gnl|loxAfr1|scaffold_14959 (6691-7077)
               

               
               3-452, gnl|oryCun1|scaffold_176341 (25584-25208)
               

               
               3-452, gnl|panTro1|chr3 (177982697-177983081)
               

               
               3-452, gnl|rheMac2|chr5 (151427110-151427493)

	3-452, gnl\|bosTau2\|chr17 (21208111-21208564)
	3-452, gnl\|canFam2\|chr15 (59272123-59272499)
	3-452, gnl\|echTel1\|scaffold_301222 (11006-10689)
	3-452, gnl\|hg17\|chr4 (160537004-160537388)
	3-452, gnl\|Hg17\|chr4 (160537110-160537561)
	3-452, gnl\|loxAfr1\|scaffold_14959 (6691-7077)
	3-452, gnl\|oryCun1\|scaffold_176341 (25584-25208)
	3-452, gnl\|panTro1\|chr3 (177982697-177983081)
	3-452, gnl\|rheMac2\|chr5 (151427110-151427493)