Non-Coding RNA Search

Utr2-C0001800_D13

Sequence:


               
               GGATGGTGTACTCTCCATGTATGAGCTGGAATACTTCTACGAGGAACAGTGTGAACGGAT
GGAAGCCATGGGCATTGAGCCCTTGCCATTCCATGACTTGCTGTGCCAGATGCTTGACCT
GGTCAAGCCAGCCAGTGATGGCAAAATAACTCTACGAGACCTGAAGAGATGCAGAATGGC
TCACATCTTTTATGACACTTTCTTTAACCTGGAGAAATACTTAGACCATGAACAGAGAGA
TCCCTTTGCTGTCCAGAAGGATGTTGAGAATGATGGTCCTGAGCCTTCCGACTGGGACAG
GTTTGCTGCTGAGGAATATGAGACCCTTGTAGCAGAGGAGTCTGCCCAAGCACAGTTCCA
GGAAGGCTCCTTTGAAGATTATGAAACAGAGGACCCTGCCTCTCCCTCTGAAACTGGAAA
CAAAGGCAATAAAATCGTAACATCAAGCCTTTCAGAGAAATGTGGAAAGCTTCAGTCAGT
AGATGAAGAATAGCTGCCATGTCCACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGTGTACTCTCCATGTATGAGCTGGAATACTTCTACGAGGAACAGTGTGAACGGAT
GGAAGCCATGGGCATTGAGCCCTTGCCATTCCATGACTTGCTGTGCCAGATGCTTGACCT
GGTCAAGCCAGCCAGTGATGGCAAAATAACTCTACGAGACCTGAAGAGATGCAGAATGGC
TCACATCTTTTATGACACTTTCTTTAACCTGGAGAAATACTTAGACCATGAACAGAGAGA
TCCCTTTGCTGTCCAGAAGGATGTTGAGAATGATGGTCCTGAGCCTTCCGACTGGGACAG
GTTTGCTGCTGAGGAATATGAGACCCTTGTAGCAGAGGAGTCTGCCCAAGCACAGTTCCA
GGAAGGCTCCTTTGAAGATTATGAAACAGAGGACCCTGCCTCTCCCTCTGAAACTGGAAA
CAAAGGCAATAAAATCGTAACATCAAGCCTTTCAGAGAAATGTGGAAAGCTTCAGTCAGT
AGATGAAGAATAGCTGCCATGTCCACATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842531|ref|XP_608633.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842531|ref|XP_608633.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               393-509, + strand, RNAz p=0.641046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-509, + strand, RNAz p=0.641046

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_181897, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_181897, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-144, gnl|bosTau2|chr1 (86017150-86017007)
               

               
               1-144, gnl|canFam2|chr23 (35654194-35654379)
               

               
               1-144, gnl|danRer3|chr14 (8456799-8456616)
               

               
               1-144, gnl|dasNov1|scaffold_73911 (42539-42354)
               

               
               1-144, gnl|echTel1|scaffold_308030 (253-438)
               

               
               1-144, gnl|fr1|chrUn (137525862-137525678)
               

               
               1-144, gnl|galGal2|chr9 (140283-140466)
               

               
               1-144, gnl|hg17|chr3 (137303529-137303714)
               

               
               1-144, gnl|Hg17|chr3 (137303583-137303726)
               

               
               1-144, gnl|loxAfr1|scaffold_38344 (7955-8140)
               

               
               1-144, gnl|mm7|chr9 (100816998-100816812)
               

               
               1-144, gnl|Mm7|chr9 (100816941-100816798)
               

               
               1-144, gnl|monDom2|scaffold_24 (30867155-30867340)
               

               
               1-144, gnl|oryCun1|scaffold_165781 (21437-21252)
               

               
               1-144, gnl|panTro1|chr2 (139570030-139570215)
               

               
               1-144, gnl|rheMac2|chr2 (151711471-151711286)
               

               
               1-144, gnl|rn3|chr8 (106100327-106100141)
               

               
               1-144, gnl|tetNig1|chr10 (8939655-8939826)
               

               
               1-144, gnl|xenTro1|scaffold_614 (57231-57059)
               


               
               366-509, gnl|bosTau2|chr1 (85989731-85989587)
               

               
               366-509, gnl|Hg17|chr3 (137346577-137346724)
               

               
               366-509, gnl|Mm7|chr9 (100797875-100797731)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr1 (86017150-86017007)
               

               
               1-144, gnl|canFam2|chr23 (35654194-35654379)
               

               
               1-144, gnl|danRer3|chr14 (8456799-8456616)
               

               
               1-144, gnl|dasNov1|scaffold_73911 (42539-42354)
               

               
               1-144, gnl|echTel1|scaffold_308030 (253-438)
               

               
               1-144, gnl|fr1|chrUn (137525862-137525678)
               

               
               1-144, gnl|galGal2|chr9 (140283-140466)
               

               
               1-144, gnl|hg17|chr3 (137303529-137303714)
               

               
               1-144, gnl|Hg17|chr3 (137303583-137303726)
               

               
               1-144, gnl|loxAfr1|scaffold_38344 (7955-8140)
               

               
               1-144, gnl|mm7|chr9 (100816998-100816812)
               

               
               1-144, gnl|Mm7|chr9 (100816941-100816798)
               

               
               1-144, gnl|monDom2|scaffold_24 (30867155-30867340)
               

               
               1-144, gnl|oryCun1|scaffold_165781 (21437-21252)
               

               
               1-144, gnl|panTro1|chr2 (139570030-139570215)
               

               
               1-144, gnl|rheMac2|chr2 (151711471-151711286)
               

               
               1-144, gnl|rn3|chr8 (106100327-106100141)
               

               
               1-144, gnl|tetNig1|chr10 (8939655-8939826)
               

               
               1-144, gnl|xenTro1|scaffold_614 (57231-57059)
               


               
               366-509, gnl|bosTau2|chr1 (85989731-85989587)
               

               
               366-509, gnl|Hg17|chr3 (137346577-137346724)
               

               
               366-509, gnl|Mm7|chr9 (100797875-100797731)

	1-144, gnl\|bosTau2\|chr1 (86017150-86017007)
	1-144, gnl\|canFam2\|chr23 (35654194-35654379)
	1-144, gnl\|danRer3\|chr14 (8456799-8456616)
	1-144, gnl\|dasNov1\|scaffold_73911 (42539-42354)
	1-144, gnl\|echTel1\|scaffold_308030 (253-438)
	1-144, gnl\|fr1\|chrUn (137525862-137525678)
	1-144, gnl\|galGal2\|chr9 (140283-140466)
	1-144, gnl\|hg17\|chr3 (137303529-137303714)
	1-144, gnl\|Hg17\|chr3 (137303583-137303726)
	1-144, gnl\|loxAfr1\|scaffold_38344 (7955-8140)
	1-144, gnl\|mm7\|chr9 (100816998-100816812)
	1-144, gnl\|Mm7\|chr9 (100816941-100816798)
	1-144, gnl\|monDom2\|scaffold_24 (30867155-30867340)
	1-144, gnl\|oryCun1\|scaffold_165781 (21437-21252)
	1-144, gnl\|panTro1\|chr2 (139570030-139570215)
	1-144, gnl\|rheMac2\|chr2 (151711471-151711286)
	1-144, gnl\|rn3\|chr8 (106100327-106100141)
	1-144, gnl\|tetNig1\|chr10 (8939655-8939826)
	1-144, gnl\|xenTro1\|scaffold_614 (57231-57059)

	366-509, gnl\|bosTau2\|chr1 (85989731-85989587)
	366-509, gnl\|Hg17\|chr3 (137346577-137346724)
	366-509, gnl\|Mm7\|chr9 (100797875-100797731)