Non-Coding RNA Search

Utr2-C0001800_D21

Sequence:


               
               TTTTAATTTTACTTTATTAAATTTATTTTTTTTCATCTGTAGATTTTGGTTGGCGGGTTG
CTATGTTTTATATTTTGACTTTTTTTTTTTTAAGATTTACTTTGTAGATTGTAGACCACA
ACTGTTTAGGGCCTTTTTGGCCTTTTTCCCTTTAATAACATGTCTACAGGTTACCAGGCA
ATTCCTCAAAAGGTTGAATTTTTAACAAACCCTCTTTGCTTTCTGGAGAATTCGGAATAG
AATTTAGATGCTCTATATATGATGCCTATTCAAAGTGAAGAAGTTGGGCCAATCTGACCT
CTAGAATATTGGCTTTTGCCTTTGCCATCCACAGTTTGGAACGAGGTCACACTGTTGTGA
GGCCTTTTAAAAAATGACCAATTTGGTACTGGTAAAACTTGTTTTGGTGATTAGCCAGAA
ATGCTTAATTCTAGACAGCTCTGGGGTGGGAATTAGAAATGTCAAGCATGTTAGAAATAA
ATTAGAGCAGGTTCTTTTCTCCCTTGTATTCAGTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAATTTTACTTTATTAAATTTATTTTTTTTCATCTGTAGATTTTGGTTGGCGGGTTG
CTATGTTTTATATTTTGACTTTTTTTTTTTTAAGATTTACTTTGTAGATTGTAGACCACA
ACTGTTTAGGGCCTTTTTGGCCTTTTTCCCTTTAATAACATGTCTACAGGTTACCAGGCA
ATTCCTCAAAAGGTTGAATTTTTAACAAACCCTCTTTGCTTTCTGGAGAATTCGGAATAG
AATTTAGATGCTCTATATATGATGCCTATTCAAAGTGAAGAAGTTGGGCCAATCTGACCT
CTAGAATATTGGCTTTTGCCTTTGCCATCCACAGTTTGGAACGAGGTCACACTGTTGTGA
GGCCTTTTAAAAAATGACCAATTTGGTACTGGTAAAACTTGTTTTGGTGATTAGCCAGAA
ATGCTTAATTCTAGACAGCTCTGGGGTGGGAATTAGAAATGTCAAGCATGTTAGAAATAA
ATTAGAGCAGGTTCTTTTCTCCCTTGTATTCAGTTTGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               37-182, - strand, RNAz p=0.836908
               

               
               262-381, - strand, RNAz p=0.899105

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-182, - strand, RNAz p=0.836908
               

               
               262-381, - strand, RNAz p=0.899105

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-519, gnl|bosTau2|chr29 (33922022-33921500)
               

               
               1-519, gnl|Hg17|chr11 (64296473-64295949)
               

               
               1-519, gnl|Mm7|chr19 (6264124-6264636)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr29 (33922022-33921500)
               

               
               1-519, gnl|Hg17|chr11 (64296473-64295949)
               

               
               1-519, gnl|Mm7|chr19 (6264124-6264636)

	37-182, - strand, RNAz p=0.836908
	262-381, - strand, RNAz p=0.899105

	1-519, gnl\|bosTau2\|chr29 (33922022-33921500)
	1-519, gnl\|Hg17\|chr11 (64296473-64295949)
	1-519, gnl\|Mm7\|chr19 (6264124-6264636)