Non-Coding RNA Search

Utr2-C0001800_P08

Sequence:


               
               TCCCCCACCTTCTCTGCGCCTCCCAGATCTGGGTCTCGAGTCTTTGCTGGTCCTGCAGGC
TCACTCCTTGCCGTCTTCTCTCTGTGTCTGTCCTTGGCCTCCCAGGAGAAGGAGGGCGTT
CAGTGGGAGGCAAAGGAGGAGGATGACGACTACGAAGAGGAGGGAGAGGAGGAAGGGGAG
AAGGAGGAGGAGGACGACCACATGGAGTACTGCCGCGTGTGCAAGGACGGCGGCGAGCTG
CTGTGCTGCGATGCCTGCATCTCCTCCTACCACATCCACTGCCTGAACCCGCCCCTGCCC
GACATCCCCAACGGTGAATGGCTGTGTCCCCGATGCACAGTGAGTGTGCCCGTCTCTCAG
GGTTTACTGTCAACCCCAACACCTTCTCCATCTCTGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCACCTTCTCTGCGCCTCCCAGATCTGGGTCTCGAGTCTTTGCTGGTCCTGCAGGC
TCACTCCTTGCCGTCTTCTCTCTGTGTCTGTCCTTGGCCTCCCAGGAGAAGGAGGGCGTT
CAGTGGGAGGCAAAGGAGGAGGATGACGACTACGAAGAGGAGGGAGAGGAGGAAGGGGAG
AAGGAGGAGGAGGACGACCACATGGAGTACTGCCGCGTGTGCAAGGACGGCGGCGAGCTG
CTGTGCTGCGATGCCTGCATCTCCTCCTACCACATCCACTGCCTGAACCCGCCCCTGCCC
GACATCCCCAACGGTGAATGGCTGTGTCCCCGATGCACAGTGAGTGTGCCCGTCTCTCAG
GGTTTACTGTCAACCCCAACACCTTCTCCATCTCTGGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-273, + strand, RNAz p=0.999881

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-273, + strand, RNAz p=0.999881

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               63-180, + strand, RNAmicro p=0.999983

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               63-180, + strand, RNAmicro p=0.999983

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               196-273, AV591350 Bos taurus brain fetus Bos taurus cDNA clone E1BR018A07 
(dbj|AV591350.1|), blast E-value=1e-27, identity=96.15% 
               

               
               195-273, UI-E-EJ0-aii-m-23-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BU740688.1|), blast E-value=5e-21, identity=92.41% 
               

               
               196-273, UI-M-GI0-cgk-h-24-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone 
(gb|CD352609.1|), blast E-value=2e-20, identity=92.31% 
               

               
               196-273, UI-M-EY0-bwx-l-19-0-UI.r1 NIH_BMAP_EY0 Mus musculus cDNA clone 
(gb|CF182368.1|), blast E-value=2e-20, identity=92.31% 
               

               
               196-273, UI-M-GI0-chk-d-04-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone 
(gb|CF539286.1|), blast E-value=2e-20, identity=92.31% 
               

               
               196-273, A0615D04-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit-/Sca-1+) 
(gb|CF911441.1|), blast E-value=2e-20, identity=92.31%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               196-273, AV591350 Bos taurus brain fetus Bos taurus cDNA clone E1BR018A07 
(dbj|AV591350.1|), blast E-value=1e-27, identity=96.15% 
               

               
               195-273, UI-E-EJ0-aii-m-23-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BU740688.1|), blast E-value=5e-21, identity=92.41% 
               

               
               196-273, UI-M-GI0-cgk-h-24-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone 
(gb|CD352609.1|), blast E-value=2e-20, identity=92.31% 
               

               
               196-273, UI-M-EY0-bwx-l-19-0-UI.r1 NIH_BMAP_EY0 Mus musculus cDNA clone 
(gb|CF182368.1|), blast E-value=2e-20, identity=92.31% 
               

               
               196-273, UI-M-GI0-chk-d-04-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone 
(gb|CF539286.1|), blast E-value=2e-20, identity=92.31% 
               

               
               196-273, A0615D04-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit-/Sca-1+) 
(gb|CF911441.1|), blast E-value=2e-20, identity=92.31%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-400, gnl|bosTau2|chr19 (15313594-15313193)
               

               
               4-400, gnl|Hg17|chr17 (7738850-7739258)
               

               
               4-400, gnl|Mm7|chr11 (69442442-69442069)
               


               
               99-347, gnl|bosTau2|chr16 (34987500-34987736)
               

               
               99-347, gnl|Hg17|chr1 (6143405-6143172)
               

               
               99-347, gnl|Mm7|chr4 (151350358-151350592)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-400, gnl|bosTau2|chr19 (15313594-15313193)
               

               
               4-400, gnl|Hg17|chr17 (7738850-7739258)
               

               
               4-400, gnl|Mm7|chr11 (69442442-69442069)
               


               
               99-347, gnl|bosTau2|chr16 (34987500-34987736)
               

               
               99-347, gnl|Hg17|chr1 (6143405-6143172)
               

               
               99-347, gnl|Mm7|chr4 (151350358-151350592)

	196-273, AV591350 Bos taurus brain fetus Bos taurus cDNA clone E1BR018A07 (dbj\|AV591350.1\|), blast E-value=1e-27, identity=96.15%
	195-273, UI-E-EJ0-aii-m-23-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BU740688.1\|), blast E-value=5e-21, identity=92.41%
	196-273, UI-M-GI0-cgk-h-24-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone (gb\|CD352609.1\|), blast E-value=2e-20, identity=92.31%
	196-273, UI-M-EY0-bwx-l-19-0-UI.r1 NIH_BMAP_EY0 Mus musculus cDNA clone (gb\|CF182368.1\|), blast E-value=2e-20, identity=92.31%
	196-273, UI-M-GI0-chk-d-04-0-UI.r1 NIH_BMAP_GI0 Mus musculus cDNA clone (gb\|CF539286.1\|), blast E-value=2e-20, identity=92.31%
	196-273, A0615D04-5 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit-/Sca-1+) (gb\|CF911441.1\|), blast E-value=2e-20, identity=92.31%

	4-400, gnl\|bosTau2\|chr19 (15313594-15313193)
	4-400, gnl\|Hg17\|chr17 (7738850-7739258)
	4-400, gnl\|Mm7\|chr11 (69442442-69442069)

	99-347, gnl\|bosTau2\|chr16 (34987500-34987736)
	99-347, gnl\|Hg17\|chr1 (6143405-6143172)
	99-347, gnl\|Mm7\|chr4 (151350358-151350592)