Non-Coding RNA Search

Utr2-C0001801_M16

Sequence:


               
               GCAGAGCAGCCAAGGTGGATGCTGCTCATATAGTGCGTTTGCACCAAAGCTGAATAACCC
AGAGCTCAGGGAACCCAGTGGACTTCAGTTGAAGCAAACCTGGCTGACTTTTGACCAAGA
GGGAAACAGTATTACATGGGACAGCAGACAGACCTGTCCCCTGCCCCAGATGGAGACTCT
CTTTGAAAGGCCCTGTTTCTTTATAGAAACATCCTTGAGAAAACAGTTGAAATAAAGGCA
TCCAGTACCTCTGCTCTAAGAAGTACCAAAATATAAGATATTCATGAAGAATTGTCTCTC
AACGGGGACAAGATTTTAGAGCCTTGTAGGCCACTGTGAGGACTTTGGCTTTTGTTTTGA
GTGATCTGGAGATGGAGGGTCTATTCTCATTCCCCTGTGCCTGCACAACATTAGGTAGAC
AGGCACTCAGAAACTGAAATGGAGTCTGAAAAGCATTTGTGTGAGGGTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGCAGCCAAGGTGGATGCTGCTCATATAGTGCGTTTGCACCAAAGCTGAATAACCC
AGAGCTCAGGGAACCCAGTGGACTTCAGTTGAAGCAAACCTGGCTGACTTTTGACCAAGA
GGGAAACAGTATTACATGGGACAGCAGACAGACCTGTCCCCTGCCCCAGATGGAGACTCT
CTTTGAAAGGCCCTGTTTCTTTATAGAAACATCCTTGAGAAAACAGTTGAAATAAAGGCA
TCCAGTACCTCTGCTCTAAGAAGTACCAAAATATAAGATATTCATGAAGAATTGTCTCTC
AACGGGGACAAGATTTTAGAGCCTTGTAGGCCACTGTGAGGACTTTGGCTTTTGTTTTGA
GTGATCTGGAGATGGAGGGTCTATTCTCATTCCCCTGTGCCTGCACAACATTAGGTAGAC
AGGCACTCAGAAACTGAAATGGAGTCTGAAAAGCATTTGTGTGAGGGTTCTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               53-357, - strand, RNAz p=0.91878
               

               
               243-379, - strand, RNAz p=0.998904

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-357, - strand, RNAz p=0.91878
               

               
               243-379, - strand, RNAz p=0.998904

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               34-379, gnl|bosTau2|chr28 (19405922-19405570)
               

               
               34-379, gnl|hg17|chr10 (71603759-71604561)
               

               
               34-379, gnl|Hg17|chr10 (71604186-71604550)
               

               
               34-379, gnl|panTro1|chr8 (72772019-72772821)
               

               
               34-379, gnl|rheMac2|chr9 (66839731-66838898)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-379, gnl|bosTau2|chr28 (19405922-19405570)
               

               
               34-379, gnl|hg17|chr10 (71603759-71604561)
               

               
               34-379, gnl|Hg17|chr10 (71604186-71604550)
               

               
               34-379, gnl|panTro1|chr8 (72772019-72772821)
               

               
               34-379, gnl|rheMac2|chr9 (66839731-66838898)

	53-357, - strand, RNAz p=0.91878
	243-379, - strand, RNAz p=0.998904

	34-379, gnl\|bosTau2\|chr28 (19405922-19405570)
	34-379, gnl\|hg17\|chr10 (71603759-71604561)
	34-379, gnl\|Hg17\|chr10 (71604186-71604550)
	34-379, gnl\|panTro1\|chr8 (72772019-72772821)
	34-379, gnl\|rheMac2\|chr9 (66839731-66838898)