Non-Coding RNA Search

Utr2-C0001802_D01

Sequence:


               
               CAAGGATTTACAAGCAGGAACCATTTATAACTTCAGGATTGTGTCTCTGACTGGAGAAGA
GAAAACTGTGGTCTTGCAAACAGATCCTTTACCTCCTGCCAGGTTTGAAGTCAGTAAAGA
GAAAACTACTTCCACCAGCTTGCATGTTTGGTGGACTCCTTCTTCGGGCAAAGTCACCTG
GTATGAGGTGCAGCTACTGGATGATAACCAAAAGACACAGGGGGCCCAAATTCAAGAAAG
AACTGCACGGAATGAATATACATTTTTAAACCTCACTGCTGGTAATAAATACAATATTGC
CATCACAGCTATTTCTGGAGATAAACGTTCCTTTACAATTTATACCAATGGATCAACAGT
GCCATCCCCAGTGAAAGATGTTGGTATTTCAGCGGAAACTAATTCCCTCCTGATTTCCTG
GTCACGTGGCCCTGGGAACCTAGAACGATACCACCTGATGCTAATGGACAAAGGGATTCT
AGTTCATAGTAATACTGTGGACAAATCTACTACTTCCTATGCTTTTCATGGACTGACACC
TGGTCACCTCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGATTTACAAGCAGGAACCATTTATAACTTCAGGATTGTGTCTCTGACTGGAGAAGA
GAAAACTGTGGTCTTGCAAACAGATCCTTTACCTCCTGCCAGGTTTGAAGTCAGTAAAGA
GAAAACTACTTCCACCAGCTTGCATGTTTGGTGGACTCCTTCTTCGGGCAAAGTCACCTG
GTATGAGGTGCAGCTACTGGATGATAACCAAAAGACACAGGGGGCCCAAATTCAAGAAAG
AACTGCACGGAATGAATATACATTTTTAAACCTCACTGCTGGTAATAAATACAATATTGC
CATCACAGCTATTTCTGGAGATAAACGTTCCTTTACAATTTATACCAATGGATCAACAGT
GCCATCCCCAGTGAAAGATGTTGGTATTTCAGCGGAAACTAATTCCCTCCTGATTTCCTG
GTCACGTGGCCCTGGGAACCTAGAACGATACCACCTGATGCTAATGGACAAAGGGATTCT
AGTTCATAGTAATACTGTGGACAAATCTACTACTTCCTATGCTTTTCATGGACTGACACC
TGGTCACCTCTATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-198, - strand, RNAz p=0.543514

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-198, - strand, RNAz p=0.543514

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               80-359, gnl|bosTau2|chr5 (28581114-28580835)
               

               
               80-359, gnl|canFam2|chr10 (15329961-15330299)
               

               
               80-359, gnl|dasNov1|scaffold_783 (141675-141337)
               

               
               80-359, gnl|echTel1|scaffold_323816 (94419-94753)
               

               
               80-359, gnl|galGal2|chr1 (32788468-32788788)
               

               
               80-359, gnl|hg17|chr12 (69276048-69276382)
               

               
               80-359, gnl|Hg17|chr12 (69276378-69276096)
               

               
               80-359, gnl|loxAfr1|scaffold_16605 (16587-16249)
               

               
               80-359, gnl|mm7|chr10 (115822042-115821693)
               

               
               80-359, gnl|Mm7|chr10 (115821695-115821977)
               

               
               80-359, gnl|monDom2|scaffold_36 (1637311-1637617)
               

               
               80-359, gnl|oryCun1|scaffold_208286 (85497-85835)
               

               
               80-359, gnl|panTro1|chr10 (70940295-70940629)
               

               
               80-359, gnl|rheMac2|chr11 (67547934-67548267)
               

               
               80-359, gnl|rn3|chr7 (55671004-55670651)
               

               
               80-359, gnl|xenTro1|scaffold_405 (286800-286473)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-359, gnl|bosTau2|chr5 (28581114-28580835)
               

               
               80-359, gnl|canFam2|chr10 (15329961-15330299)
               

               
               80-359, gnl|dasNov1|scaffold_783 (141675-141337)
               

               
               80-359, gnl|echTel1|scaffold_323816 (94419-94753)
               

               
               80-359, gnl|galGal2|chr1 (32788468-32788788)
               

               
               80-359, gnl|hg17|chr12 (69276048-69276382)
               

               
               80-359, gnl|Hg17|chr12 (69276378-69276096)
               

               
               80-359, gnl|loxAfr1|scaffold_16605 (16587-16249)
               

               
               80-359, gnl|mm7|chr10 (115822042-115821693)
               

               
               80-359, gnl|Mm7|chr10 (115821695-115821977)
               

               
               80-359, gnl|monDom2|scaffold_36 (1637311-1637617)
               

               
               80-359, gnl|oryCun1|scaffold_208286 (85497-85835)
               

               
               80-359, gnl|panTro1|chr10 (70940295-70940629)
               

               
               80-359, gnl|rheMac2|chr11 (67547934-67548267)
               

               
               80-359, gnl|rn3|chr7 (55671004-55670651)
               

               
               80-359, gnl|xenTro1|scaffold_405 (286800-286473)

	80-359, gnl\|bosTau2\|chr5 (28581114-28580835)
	80-359, gnl\|canFam2\|chr10 (15329961-15330299)
	80-359, gnl\|dasNov1\|scaffold_783 (141675-141337)
	80-359, gnl\|echTel1\|scaffold_323816 (94419-94753)
	80-359, gnl\|galGal2\|chr1 (32788468-32788788)
	80-359, gnl\|hg17\|chr12 (69276048-69276382)
	80-359, gnl\|Hg17\|chr12 (69276378-69276096)
	80-359, gnl\|loxAfr1\|scaffold_16605 (16587-16249)
	80-359, gnl\|mm7\|chr10 (115822042-115821693)
	80-359, gnl\|Mm7\|chr10 (115821695-115821977)
	80-359, gnl\|monDom2\|scaffold_36 (1637311-1637617)
	80-359, gnl\|oryCun1\|scaffold_208286 (85497-85835)
	80-359, gnl\|panTro1\|chr10 (70940295-70940629)
	80-359, gnl\|rheMac2\|chr11 (67547934-67548267)
	80-359, gnl\|rn3\|chr7 (55671004-55670651)
	80-359, gnl\|xenTro1\|scaffold_405 (286800-286473)