Non-Coding RNA Search

Utr2-C0001803_B13

Sequence:


               
               CCAACGGCCACAGTGGCCTCTCCTAGCCACCCACCAGGGCCCAGTAATTGTAGGCAGGAG
AAAGCACCTCCTCCAGCAAATCCTGCTCCGGTCTCAGGTGCCTCACCTGTTCATTTTATA
GCCGATGGCATAGTTGAGCCCAAAGCAGGTTCTAGTAAGAATACATCAAACCCTTCAGCC
TCAGCAGAGAGAAGTGCTAGTGCTTCAGTGGATATGACTCCCTTCCCTTTAACATCTCTA
TTGACAACAGCCACTTTAGAAAAGCTTCCTGTACCCCAGGTCACTGTAACGAGAGCACCT
ACTGGATCAGCTCCATCCTCTTTGAGCACATTGCCAGCAGCTCCTAGCCTTAAAACTCCA
GGAACTTCAAATATGAATGGACCCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACGGCCACAGTGGCCTCTCCTAGCCACCCACCAGGGCCCAGTAATTGTAGGCAGGAG
AAAGCACCTCCTCCAGCAAATCCTGCTCCGGTCTCAGGTGCCTCACCTGTTCATTTTATA
GCCGATGGCATAGTTGAGCCCAAAGCAGGTTCTAGTAAGAATACATCAAACCCTTCAGCC
TCAGCAGAGAGAAGTGCTAGTGCTTCAGTGGATATGACTCCCTTCCCTTTAACATCTCTA
TTGACAACAGCCACTTTAGAAAAGCTTCCTGTACCCCAGGTCACTGTAACGAGAGCACCT
ACTGGATCAGCTCCATCCTCTTTGAGCACATTGCCAGCAGCTCCTAGCCTTAAAACTCCA
GGAACTTCAAATATGAATGGACCCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-158, - strand, RNAz p=0.979648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-158, - strand, RNAz p=0.979648

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               81-156, + strand, RNAmicro p=0.999699
               

               
               66-173, - strand, RNAmicro p=0.945093

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               81-156, + strand, RNAmicro p=0.999699
               

               
               66-173, - strand, RNAmicro p=0.945093

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-387, gnl|bosTau2|chr11 (54377918-54377531)
               

               
               3-387, gnl|Hg17|chr2 (25878424-25878040)
               

               
               3-387, gnl|Mm7|chr12 (3419007-3419379)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-387, gnl|bosTau2|chr11 (54377918-54377531)
               

               
               3-387, gnl|Hg17|chr2 (25878424-25878040)
               

               
               3-387, gnl|Mm7|chr12 (3419007-3419379)

	81-156, + strand, RNAmicro p=0.999699
	66-173, - strand, RNAmicro p=0.945093

	3-387, gnl\|bosTau2\|chr11 (54377918-54377531)
	3-387, gnl\|Hg17\|chr2 (25878424-25878040)
	3-387, gnl\|Mm7\|chr12 (3419007-3419379)