Non-Coding RNA Search

Utr2-C0001804_M04

Sequence:


               
               AGTGTCAGGACACTACAGGACCTTTCACTAGGAAGTTCAAGGTGTTACTGCTCAACAGCT
GCACATCAGCCAAGTCAACGTAACAGTGGAGTAATCTCCATTATGTCAGAATATATGTAG
CAGAATCTTTGATACTTTACACCTATTAATTCTAACCCTTGAAACCCTGCAATATAGAGC
TTACTGTTGCACTTTACAGATGAAGAGCCTGGAGCTCAAGAAAATTAAATAACTTGTCTG
ATACCACAGATTGAGTCAAGGCAATCAAAGAATCTGATCCAAGGATTGTTCTTCCCTTTA
AAATCCATGCTATTTCATTTTGCTAAGCTACAGTGGAATTGAAGTCAATTTTGGTTTGGA
AGTTATTCTCAACACTTCCTATTCAGATATGATAGTATTTTCCAAAACTGCCCTGCATAT
GAGCCTCCTACTTCACTTTAAATATGGGTCCATTCATCACTAGTAATAGTTCTCTTGGAG
TCATCCAAGGGAGATTTCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTCAGGACACTACAGGACCTTTCACTAGGAAGTTCAAGGTGTTACTGCTCAACAGCT
GCACATCAGCCAAGTCAACGTAACAGTGGAGTAATCTCCATTATGTCAGAATATATGTAG
CAGAATCTTTGATACTTTACACCTATTAATTCTAACCCTTGAAACCCTGCAATATAGAGC
TTACTGTTGCACTTTACAGATGAAGAGCCTGGAGCTCAAGAAAATTAAATAACTTGTCTG
ATACCACAGATTGAGTCAAGGCAATCAAAGAATCTGATCCAAGGATTGTTCTTCCCTTTA
AAATCCATGCTATTTCATTTTGCTAAGCTACAGTGGAATTGAAGTCAATTTTGGTTTGGA
AGTTATTCTCAACACTTCCTATTCAGATATGATAGTATTTTCCAAAACTGCCCTGCATAT
GAGCCTCCTACTTCACTTTAAATATGGGTCCATTCATCACTAGTAATAGTTCTCTTGGAG
TCATCCAAGGGAGATTTCAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               283-400, - strand, RNAz p=0.692449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-400, - strand, RNAz p=0.692449

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               85-501, gnl|bosTau2|chr28 (34672613-34672199)
               

               
               85-501, gnl|canFam2|chr28 (6485805-6485400)
               

               
               85-501, gnl|dasNov1|scaffold_6226 (9895-9374)
               

               
               85-501, gnl|hg17|chr10 (43460649-43461091)
               

               
               85-501, gnl|Hg17|chr10 (43460826-43461238)
               

               
               85-501, gnl|mm7|chr6 (117869667-117869293)
               

               
               85-501, gnl|oryCun1|scaffold_204060 (50933-50569)
               

               
               85-501, gnl|panTro1|chr8 (44167154-44167596)
               

               
               85-501, gnl|rheMac2|chr9 (43808076-43808518)
               

               
               85-501, gnl|rn3|chr4 (154376882-154376510)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-501, gnl|bosTau2|chr28 (34672613-34672199)
               

               
               85-501, gnl|canFam2|chr28 (6485805-6485400)
               

               
               85-501, gnl|dasNov1|scaffold_6226 (9895-9374)
               

               
               85-501, gnl|hg17|chr10 (43460649-43461091)
               

               
               85-501, gnl|Hg17|chr10 (43460826-43461238)
               

               
               85-501, gnl|mm7|chr6 (117869667-117869293)
               

               
               85-501, gnl|oryCun1|scaffold_204060 (50933-50569)
               

               
               85-501, gnl|panTro1|chr8 (44167154-44167596)
               

               
               85-501, gnl|rheMac2|chr9 (43808076-43808518)
               

               
               85-501, gnl|rn3|chr4 (154376882-154376510)

	85-501, gnl\|bosTau2\|chr28 (34672613-34672199)
	85-501, gnl\|canFam2\|chr28 (6485805-6485400)
	85-501, gnl\|dasNov1\|scaffold_6226 (9895-9374)
	85-501, gnl\|hg17\|chr10 (43460649-43461091)
	85-501, gnl\|Hg17\|chr10 (43460826-43461238)
	85-501, gnl\|mm7\|chr6 (117869667-117869293)
	85-501, gnl\|oryCun1\|scaffold_204060 (50933-50569)
	85-501, gnl\|panTro1\|chr8 (44167154-44167596)
	85-501, gnl\|rheMac2\|chr9 (43808076-43808518)
	85-501, gnl\|rn3\|chr4 (154376882-154376510)