Non-Coding RNA Search

Utr2-C0001805_E14

Sequence:


               
               GGCACAGGGTGGCTAGCTAACCCAAGGTCACACACACAAGCCTGACTTGCAAGTGGGTGA
ATGCGCTTTTAATATATCTCTAAAGGGATCTTTAACAGAAAAGAGTACGGACCCCAATTT
GGTGCTTCTTTCGTGATCCTTGTTGAAATAACTTCAAGAAGTGACAATGACGCCAGGCAT
CTGGTTAACTATTACGTGGTGCACTAACCTCAAAATAGAAAGTCTGGTCAGTAAGAATTT
TTATTGGAGAGTCAGAGAGCTATTTTAGGAAGCTGCTGCTGGAAAGGATATCCCTTCGAC
AGCAGATCCCTAAGTTCCTAGTGCCCAGCTGCCTCACCAACAGCATCTCCTGACTGTGCA
AGGGCTGCTAGGGCTGCAAGCAGGGGCAGCGAGCCCAGCCTATTAACCCTTCTCTGTTTT
CTTTCCAGCTAGCCACAGTGCAACCTGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACAGGGTGGCTAGCTAACCCAAGGTCACACACACAAGCCTGACTTGCAAGTGGGTGA
ATGCGCTTTTAATATATCTCTAAAGGGATCTTTAACAGAAAAGAGTACGGACCCCAATTT
GGTGCTTCTTTCGTGATCCTTGTTGAAATAACTTCAAGAAGTGACAATGACGCCAGGCAT
CTGGTTAACTATTACGTGGTGCACTAACCTCAAAATAGAAAGTCTGGTCAGTAAGAATTT
TTATTGGAGAGTCAGAGAGCTATTTTAGGAAGCTGCTGCTGGAAAGGATATCCCTTCGAC
AGCAGATCCCTAAGTTCCTAGTGCCCAGCTGCCTCACCAACAGCATCTCCTGACTGTGCA
AGGGCTGCTAGGGCTGCAAGCAGGGGCAGCGAGCCCAGCCTATTAACCCTTCTCTGTTTT
CTTTCCAGCTAGCCACAGTGCAACCTGGCCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               21-120, - strand, RNAz p=0.684951
               

               
               200-356, - strand, RNAz p=0.998474

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-120, - strand, RNAz p=0.684951
               

               
               200-356, - strand, RNAz p=0.998474

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               205-342, DA800621 OCBBF3 Homo sapiens cDNA clone OCBBF3004632 5', mRNA 
(dbj|DA800621.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, DB345623 THYMU3 Homo sapiens cDNA clone THYMU3018854 3', mRNA 
(dbj|DB345623.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, wd13g01.x1 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE (gb|AI694012.1|), 
blast E-value=7e-19, identity=84.89% 
               

               
               205-342, IL3-NT0105-010800-229-G03 NT0105 Homo sapiens cDNA, mRNA sequence 
(gb|BE766660.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, UI-H-FL0-bdp-o-20-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone 
(gb|BU632507.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, UMC-bof_0B01-007-a11 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|CX954806.1|), blast E-value=1e-32, identity=88.41%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               205-342, DA800621 OCBBF3 Homo sapiens cDNA clone OCBBF3004632 5', mRNA 
(dbj|DA800621.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, DB345623 THYMU3 Homo sapiens cDNA clone THYMU3018854 3', mRNA 
(dbj|DB345623.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, wd13g01.x1 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE (gb|AI694012.1|), 
blast E-value=7e-19, identity=84.89% 
               

               
               205-342, IL3-NT0105-010800-229-G03 NT0105 Homo sapiens cDNA, mRNA sequence 
(gb|BE766660.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, UI-H-FL0-bdp-o-20-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone 
(gb|BU632507.1|), blast E-value=7e-19, identity=84.89% 
               

               
               205-342, UMC-bof_0B01-007-a11 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|CX954806.1|), blast E-value=1e-32, identity=88.41%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-452, gnl|bosTau2|chr3 (26044862-26045309)
               

               
               1-452, gnl|Hg17|chr1 (109657178-109656731)
               

               
               1-452, gnl|Mm7|chr3 (108097139-108098046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-452, gnl|bosTau2|chr3 (26044862-26045309)
               

               
               1-452, gnl|Hg17|chr1 (109657178-109656731)
               

               
               1-452, gnl|Mm7|chr3 (108097139-108098046)

	21-120, - strand, RNAz p=0.684951
	200-356, - strand, RNAz p=0.998474

	205-342, DA800621 OCBBF3 Homo sapiens cDNA clone OCBBF3004632 5', mRNA (dbj\|DA800621.1\|), blast E-value=7e-19, identity=84.89%
	205-342, DB345623 THYMU3 Homo sapiens cDNA clone THYMU3018854 3', mRNA (dbj\|DB345623.1\|), blast E-value=7e-19, identity=84.89%
	205-342, wd13g01.x1 NCI_CGAP_Co3 Homo sapiens cDNA clone IMAGE (gb\|AI694012.1\|), blast E-value=7e-19, identity=84.89%
	205-342, IL3-NT0105-010800-229-G03 NT0105 Homo sapiens cDNA, mRNA sequence (gb\|BE766660.1\|), blast E-value=7e-19, identity=84.89%
	205-342, UI-H-FL0-bdp-o-20-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone (gb\|BU632507.1\|), blast E-value=7e-19, identity=84.89%
	205-342, UMC-bof_0B01-007-a11 Ovarian follicle recruited bof Bos taurus cDNA (gb\|CX954806.1\|), blast E-value=1e-32, identity=88.41%

	1-452, gnl\|bosTau2\|chr3 (26044862-26045309)
	1-452, gnl\|Hg17\|chr1 (109657178-109656731)
	1-452, gnl\|Mm7\|chr3 (108097139-108098046)