Non-Coding RNA Search

Utr2-C0001805_L13

Sequence:


               
               CAGCTGCAGATTTATTGATAATTCCAATTCTGGACTTCAGATTTCTCTCAATGTCAATAA
TACTGAACATACTGTTTCCATTGTAACTGACTACAACAACTTGAAGACAAGGTTCGATTA
CCTGGGATTTGGTGGCTTTGCCAGTGTGGCTGATCAGGTCCAAATAACCCGATTTGGTTT
GGGCACTCAGGCAATAGCAAAGCCCATAAGACGTGATAGAGTGATTTTCCCCTTTGGATT
TAAATTCAATGTAGCAGTTGGATTGGTTTTGTGCATCAGCTTGGTGGTCTTAACTTTTCA
GTGGCGGTTTTACCTTTCCTTTCGAAAGCTGATGCGGTGGATCCTCATACTTGTGATTGC
CTTGTGGTTCATCGAGTTGCTGGATGTGTGGAGCACTTGCACGCAGCCCATCTGTGCAAA
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGCAGATTTATTGATAATTCCAATTCTGGACTTCAGATTTCTCTCAATGTCAATAA
TACTGAACATACTGTTTCCATTGTAACTGACTACAACAACTTGAAGACAAGGTTCGATTA
CCTGGGATTTGGTGGCTTTGCCAGTGTGGCTGATCAGGTCCAAATAACCCGATTTGGTTT
GGGCACTCAGGCAATAGCAAAGCCCATAAGACGTGATAGAGTGATTTTCCCCTTTGGATT
TAAATTCAATGTAGCAGTTGGATTGGTTTTGTGCATCAGCTTGGTGGTCTTAACTTTTCA
GTGGCGGTTTTACCTTTCCTTTCGAAAGCTGATGCGGTGGATCCTCATACTTGTGATTGC
CTTGTGGTTCATCGAGTTGCTGGATGTGTGGAGCACTTGCACGCAGCCCATCTGTGCAAA
G

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-349, - strand, RNAz p=0.888385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-349, - strand, RNAz p=0.888385

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-421, gnl|bosTau2|chr24 (9453226-9452806)
               

               
               1-421, gnl|canFam2|chr1 (13351320-13350275)
               

               
               1-421, gnl|danRer3|chr2 (18770349-18771361)
               

               
               1-421, gnl|fr1|chrUn (100924377-100925431)
               

               
               1-421, gnl|galGal2|chr2 (94540209-94539152)
               

               
               1-421, gnl|hg17|chr18 (63329639-63330684)
               

               
               1-421, gnl|Hg17|chr18 (63330756-63330336)
               

               
               1-421, gnl|mm7|chr1 (111758726-111759771)
               

               
               1-421, gnl|Mm7|chr1 (111759843-111759423)
               

               
               1-421, gnl|monDom2|scaffold_21 (10322874-10321817)
               

               
               1-421, gnl|panTro1|chr17 (60272775-60273820)
               

               
               1-421, gnl|rheMac2|chr18 (61070373-61071339)
               

               
               1-421, gnl|rn3|chr13 (19400572-19399524)
               

               
               1-421, gnl|tetNig1|chr6 (5226618-5225570)
               

               
               1-421, gnl|xenTro1|scaffold_565 (377501-378537)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-421, gnl|bosTau2|chr24 (9453226-9452806)
               

               
               1-421, gnl|canFam2|chr1 (13351320-13350275)
               

               
               1-421, gnl|danRer3|chr2 (18770349-18771361)
               

               
               1-421, gnl|fr1|chrUn (100924377-100925431)
               

               
               1-421, gnl|galGal2|chr2 (94540209-94539152)
               

               
               1-421, gnl|hg17|chr18 (63329639-63330684)
               

               
               1-421, gnl|Hg17|chr18 (63330756-63330336)
               

               
               1-421, gnl|mm7|chr1 (111758726-111759771)
               

               
               1-421, gnl|Mm7|chr1 (111759843-111759423)
               

               
               1-421, gnl|monDom2|scaffold_21 (10322874-10321817)
               

               
               1-421, gnl|panTro1|chr17 (60272775-60273820)
               

               
               1-421, gnl|rheMac2|chr18 (61070373-61071339)
               

               
               1-421, gnl|rn3|chr13 (19400572-19399524)
               

               
               1-421, gnl|tetNig1|chr6 (5226618-5225570)
               

               
               1-421, gnl|xenTro1|scaffold_565 (377501-378537)

	1-421, gnl\|bosTau2\|chr24 (9453226-9452806)
	1-421, gnl\|canFam2\|chr1 (13351320-13350275)
	1-421, gnl\|danRer3\|chr2 (18770349-18771361)
	1-421, gnl\|fr1\|chrUn (100924377-100925431)
	1-421, gnl\|galGal2\|chr2 (94540209-94539152)
	1-421, gnl\|hg17\|chr18 (63329639-63330684)
	1-421, gnl\|Hg17\|chr18 (63330756-63330336)
	1-421, gnl\|mm7\|chr1 (111758726-111759771)
	1-421, gnl\|Mm7\|chr1 (111759843-111759423)
	1-421, gnl\|monDom2\|scaffold_21 (10322874-10321817)
	1-421, gnl\|panTro1\|chr17 (60272775-60273820)
	1-421, gnl\|rheMac2\|chr18 (61070373-61071339)
	1-421, gnl\|rn3\|chr13 (19400572-19399524)
	1-421, gnl\|tetNig1\|chr6 (5226618-5225570)
	1-421, gnl\|xenTro1\|scaffold_565 (377501-378537)