Non-Coding RNA Search

Utr2-C0001808_A15

Sequence:


               
               CGGTGGTCAGTTACCAGGTCTCGATCCTGAGGCAATGGCCATGAAGAGCATCCTGCGCAT
TCCCATCCAGAAGGGAAATGCTGTTGTGAGAATGGCAGTCTCCTCTATGTTCAGCTCTGT
GACTGAAAGACATTGTTCAACAGCTGTGGATTTATAAGATGTTGCACATGAATACTTTGC
CTGGGCTTATTTAGAAAAACTGGTCTAGGCTTCCACAGTTTGGGATTTATGGCTATATTT
TTTGAACTTTATTAGGTGGCTCTCAGAGTTACTTTTCAGGTGGACATTGACTTCATGCCA
GCTCTCTGAGATGATTTTCCTTAAAAATCATGGTTATACAGGATACATTTTGTAGTAGAG
AGCAGGTGCCCACAGCAGAGCTCAGATGGATTGCATGTGAGCAGGAAGGGAGCAGAGACG
AGAAGAAAACTGTATGTTCCACACAGCTCCATTGACAGCTGTGTGGCTCTCCAGGATGTG
TCAACTACTGTTTTTATTTACAAAATGGACTTGAAGATCAGTTAGTAAACAAACCGCATC
CT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGTCAGTTACCAGGTCTCGATCCTGAGGCAATGGCCATGAAGAGCATCCTGCGCAT
TCCCATCCAGAAGGGAAATGCTGTTGTGAGAATGGCAGTCTCCTCTATGTTCAGCTCTGT
GACTGAAAGACATTGTTCAACAGCTGTGGATTTATAAGATGTTGCACATGAATACTTTGC
CTGGGCTTATTTAGAAAAACTGGTCTAGGCTTCCACAGTTTGGGATTTATGGCTATATTT
TTTGAACTTTATTAGGTGGCTCTCAGAGTTACTTTTCAGGTGGACATTGACTTCATGCCA
GCTCTCTGAGATGATTTTCCTTAAAAATCATGGTTATACAGGATACATTTTGTAGTAGAG
AGCAGGTGCCCACAGCAGAGCTCAGATGGATTGCATGTGAGCAGGAAGGGAGCAGAGACG
AGAAGAAAACTGTATGTTCCACACAGCTCCATTGACAGCTGTGTGGCTCTCCAGGATGTG
TCAACTACTGTTTTTATTTACAAAATGGACTTGAAGATCAGTTAGTAAACAAACCGCATC
CT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-151, + strand, RNAz p=0.561239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-151, + strand, RNAz p=0.561239

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-318, gnl|bosTau2|chr21 (1982275-1981966)
               

               
               3-318, gnl|canFam2|chr3 (44791274-44791654)
               

               
               3-318, gnl|echTel1|scaffold_322027 (68133-68510)
               

               
               3-318, gnl|hg17|chr15 (97154546-97154945)
               

               
               3-318, gnl|Hg17|chr15 (97154745-97155067)
               

               
               3-318, gnl|loxAfr1|scaffold_9842 (58372-57992)
               

               
               3-318, gnl|mm7|chr7 (63935676-63936037)
               

               
               3-318, gnl|Mm7|chr7 (63935868-63936169)
               

               
               3-318, gnl|monDom2|scaffold_12 (62140684-62141081)
               

               
               3-318, gnl|oryCun1|scaffold_89052 (1039-1409)
               

               
               3-318, gnl|panTro1|chr16 (98219083-98219482)
               

               
               3-318, gnl|rheMac2|chr7 (78800623-78801023)
               

               
               3-318, gnl|rn3|chr1 (122912810-122913330)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-318, gnl|bosTau2|chr21 (1982275-1981966)
               

               
               3-318, gnl|canFam2|chr3 (44791274-44791654)
               

               
               3-318, gnl|echTel1|scaffold_322027 (68133-68510)
               

               
               3-318, gnl|hg17|chr15 (97154546-97154945)
               

               
               3-318, gnl|Hg17|chr15 (97154745-97155067)
               

               
               3-318, gnl|loxAfr1|scaffold_9842 (58372-57992)
               

               
               3-318, gnl|mm7|chr7 (63935676-63936037)
               

               
               3-318, gnl|Mm7|chr7 (63935868-63936169)
               

               
               3-318, gnl|monDom2|scaffold_12 (62140684-62141081)
               

               
               3-318, gnl|oryCun1|scaffold_89052 (1039-1409)
               

               
               3-318, gnl|panTro1|chr16 (98219083-98219482)
               

               
               3-318, gnl|rheMac2|chr7 (78800623-78801023)
               

               
               3-318, gnl|rn3|chr1 (122912810-122913330)

	3-318, gnl\|bosTau2\|chr21 (1982275-1981966)
	3-318, gnl\|canFam2\|chr3 (44791274-44791654)
	3-318, gnl\|echTel1\|scaffold_322027 (68133-68510)
	3-318, gnl\|hg17\|chr15 (97154546-97154945)
	3-318, gnl\|Hg17\|chr15 (97154745-97155067)
	3-318, gnl\|loxAfr1\|scaffold_9842 (58372-57992)
	3-318, gnl\|mm7\|chr7 (63935676-63936037)
	3-318, gnl\|Mm7\|chr7 (63935868-63936169)
	3-318, gnl\|monDom2\|scaffold_12 (62140684-62141081)
	3-318, gnl\|oryCun1\|scaffold_89052 (1039-1409)
	3-318, gnl\|panTro1\|chr16 (98219083-98219482)
	3-318, gnl\|rheMac2\|chr7 (78800623-78801023)
	3-318, gnl\|rn3\|chr1 (122912810-122913330)