Non-Coding RNA Search

Utr2-C0001810_M10

Sequence:


               
               CTCTTCTCGAAACCCAGCGGTTGGCCTAGGGGTCCGTGACTGAGAGGAGAGGCTGGCTGA
GTTCTCATGGCTGTTCCTCTGTAACCTTTCCCCTCCCATATCACCTCAGACCCAGTCTAG
GCAGAGAGTAGGGAGAATCCTTCACTCACTCTTTATGGATTCAAATGAATCCCTCTAAAT
TATCTTCACATGCTTTTCTCCTCTCACGTGTCCCCCTCTCCCCCCAATTGTTGTGCTTGT
GTGTAAAGATCACTTTGGGAATATTCTTTGATATTTATTTTATTATTTCACCTCTCTTTC
AAGAATGAATAATTAAAGGAGCAGGTCACTTTCAGGGGACATCAGTTAGATTCTGAAAAC
CTGATGATTCCTTTTCCTTCCCTGTTTAGTAATTATGGAAGCTAATTAGGATTGTTTCCT
AATTTGGAACCAAATCTTACAGGTTAAATACTAATACTTTTGATATCAGGTCTAATTCCC
ATGACCACTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTCTCGAAACCCAGCGGTTGGCCTAGGGGTCCGTGACTGAGAGGAGAGGCTGGCTGA
GTTCTCATGGCTGTTCCTCTGTAACCTTTCCCCTCCCATATCACCTCAGACCCAGTCTAG
GCAGAGAGTAGGGAGAATCCTTCACTCACTCTTTATGGATTCAAATGAATCCCTCTAAAT
TATCTTCACATGCTTTTCTCCTCTCACGTGTCCCCCTCTCCCCCCAATTGTTGTGCTTGT
GTGTAAAGATCACTTTGGGAATATTCTTTGATATTTATTTTATTATTTCACCTCTCTTTC
AAGAATGAATAATTAAAGGAGCAGGTCACTTTCAGGGGACATCAGTTAGATTCTGAAAAC
CTGATGATTCCTTTTCCTTCCCTGTTTAGTAATTATGGAAGCTAATTAGGATTGTTTCCT
AATTTGGAACCAAATCTTACAGGTTAAATACTAATACTTTTGATATCAGGTCTAATTCCC
ATGACCACTTCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               82-233, - strand, RNAz p=0.924844

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-233, - strand, RNAz p=0.924844

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-493, gnl|bosTau2|chr16 (42765766-42765274)
               

               
               2-493, gnl|canFam2|chr7 (23695348-23694756)
               

               
               2-493, gnl|dasNov1|scaffold_3432 (76760-77316)
               

               
               2-493, gnl|echTel1|scaffold_321357 (101264-101794)
               

               
               2-493, gnl|hg17|chr1 (175806726-175807324)
               

               
               2-493, gnl|Hg17|chr1 (175807494-175806978)
               

               
               2-493, gnl|loxAfr1|scaffold_3229 (53983-54553)
               

               
               2-493, gnl|mm7|chr1 (156606898-156606358)
               

               
               2-493, gnl|monDom2|scaffold_16 (31850362-31850918)
               

               
               2-493, gnl|oryCun1|scaffold_128767 (4383-4925)
               

               
               2-493, gnl|panTro1|chr1 (158199367-158199965)
               

               
               2-493, gnl|rheMac2|chr1 (191633873-191633276)
               

               
               2-493, gnl|rn3|chr13 (71855298-71854737)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-493, gnl|bosTau2|chr16 (42765766-42765274)
               

               
               2-493, gnl|canFam2|chr7 (23695348-23694756)
               

               
               2-493, gnl|dasNov1|scaffold_3432 (76760-77316)
               

               
               2-493, gnl|echTel1|scaffold_321357 (101264-101794)
               

               
               2-493, gnl|hg17|chr1 (175806726-175807324)
               

               
               2-493, gnl|Hg17|chr1 (175807494-175806978)
               

               
               2-493, gnl|loxAfr1|scaffold_3229 (53983-54553)
               

               
               2-493, gnl|mm7|chr1 (156606898-156606358)
               

               
               2-493, gnl|monDom2|scaffold_16 (31850362-31850918)
               

               
               2-493, gnl|oryCun1|scaffold_128767 (4383-4925)
               

               
               2-493, gnl|panTro1|chr1 (158199367-158199965)
               

               
               2-493, gnl|rheMac2|chr1 (191633873-191633276)
               

               
               2-493, gnl|rn3|chr13 (71855298-71854737)

	2-493, gnl\|bosTau2\|chr16 (42765766-42765274)
	2-493, gnl\|canFam2\|chr7 (23695348-23694756)
	2-493, gnl\|dasNov1\|scaffold_3432 (76760-77316)
	2-493, gnl\|echTel1\|scaffold_321357 (101264-101794)
	2-493, gnl\|hg17\|chr1 (175806726-175807324)
	2-493, gnl\|Hg17\|chr1 (175807494-175806978)
	2-493, gnl\|loxAfr1\|scaffold_3229 (53983-54553)
	2-493, gnl\|mm7\|chr1 (156606898-156606358)
	2-493, gnl\|monDom2\|scaffold_16 (31850362-31850918)
	2-493, gnl\|oryCun1\|scaffold_128767 (4383-4925)
	2-493, gnl\|panTro1\|chr1 (158199367-158199965)
	2-493, gnl\|rheMac2\|chr1 (191633873-191633276)
	2-493, gnl\|rn3\|chr13 (71855298-71854737)