Non-Coding RNA Search

Utr2-C0001811_C23

Sequence:


               
               CATGGACGCCCAGAGCTGACCAACCGGCGAGCCCTGTCCGCAGCCACCTTCCTTCTCTTC
CCCATCAACATGCTCGTGGGCGCCATGGTGGCTGCCTGGCGAGTGCTCCTCTCTGCCCTT
TACAACGCCGTGCACCTTGGCCAGATGGACCTCAGCCTGCTGCCACATAGAGCTGCCACT
CTCGACCCTGGCTACCGTACCTACTGCAACTTCTTGAAGATGGAGGTCAGCCAGTCGCAT
CCAGCCTTGACAGCCTTCTGTGCCCTGCTCCTGCGAACTCAGAGGCCCCAGCCCCGCACA
GCCCCCCAGCACGGCCTTGGACCAGAGGAGGAAGAGGAAGGGATGCAGTTGCTTCAGACC
AAGGACCCGATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGACGCCCAGAGCTGACCAACCGGCGAGCCCTGTCCGCAGCCACCTTCCTTCTCTTC
CCCATCAACATGCTCGTGGGCGCCATGGTGGCTGCCTGGCGAGTGCTCCTCTCTGCCCTT
TACAACGCCGTGCACCTTGGCCAGATGGACCTCAGCCTGCTGCCACATAGAGCTGCCACT
CTCGACCCTGGCTACCGTACCTACTGCAACTTCTTGAAGATGGAGGTCAGCCAGTCGCAT
CCAGCCTTGACAGCCTTCTGTGCCCTGCTCCTGCGAACTCAGAGGCCCCAGCCCCGCACA
GCCCCCCAGCACGGCCTTGGACCAGAGGAGGAAGAGGAAGGGATGCAGTTGCTTCAGACC
AAGGACCCGATGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               16-134, + strand, RNAz p=0.795551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               16-134, + strand, RNAz p=0.795551

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               16-191, gnl|bosTau2|chr21 (23098980-23098805)
               

               
               16-191, gnl|canFam2|chr30 (40332328-40332483)
               

               
               16-191, gnl|fr1|chrUn (289059022-289058874)
               

               
               16-191, gnl|galGal2|chr10 (160835-160682)
               

               
               16-191, gnl|hg17|chr15 (72260679-72260834)
               

               
               16-191, gnl|Hg17|chr15 (72260861-72260688)
               

               
               16-191, gnl|loxAfr1|scaffold_43189 (11010-10855)
               

               
               16-191, gnl|mm7|chr9 (58180275-58180120)
               

               
               16-191, gnl|Mm7|chr9 (58180089-58180264)
               

               
               16-191, gnl|monDom2|scaffold_41 (4155857-4155699)
               

               
               16-191, gnl|rheMac2|chr7 (52970346-52970501)
               

               
               16-191, gnl|rn3|chr8 (61956911-61956756)
               

               
               16-191, gnl|tetNig1|chr13 (7412697-7412851)
               

               
               16-191, gnl|xenTro1|scaffold_62 (7248-7395)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-191, gnl|bosTau2|chr21 (23098980-23098805)
               

               
               16-191, gnl|canFam2|chr30 (40332328-40332483)
               

               
               16-191, gnl|fr1|chrUn (289059022-289058874)
               

               
               16-191, gnl|galGal2|chr10 (160835-160682)
               

               
               16-191, gnl|hg17|chr15 (72260679-72260834)
               

               
               16-191, gnl|Hg17|chr15 (72260861-72260688)
               

               
               16-191, gnl|loxAfr1|scaffold_43189 (11010-10855)
               

               
               16-191, gnl|mm7|chr9 (58180275-58180120)
               

               
               16-191, gnl|Mm7|chr9 (58180089-58180264)
               

               
               16-191, gnl|monDom2|scaffold_41 (4155857-4155699)
               

               
               16-191, gnl|rheMac2|chr7 (52970346-52970501)
               

               
               16-191, gnl|rn3|chr8 (61956911-61956756)
               

               
               16-191, gnl|tetNig1|chr13 (7412697-7412851)
               

               
               16-191, gnl|xenTro1|scaffold_62 (7248-7395)

	16-191, gnl\|bosTau2\|chr21 (23098980-23098805)
	16-191, gnl\|canFam2\|chr30 (40332328-40332483)
	16-191, gnl\|fr1\|chrUn (289059022-289058874)
	16-191, gnl\|galGal2\|chr10 (160835-160682)
	16-191, gnl\|hg17\|chr15 (72260679-72260834)
	16-191, gnl\|Hg17\|chr15 (72260861-72260688)
	16-191, gnl\|loxAfr1\|scaffold_43189 (11010-10855)
	16-191, gnl\|mm7\|chr9 (58180275-58180120)
	16-191, gnl\|Mm7\|chr9 (58180089-58180264)
	16-191, gnl\|monDom2\|scaffold_41 (4155857-4155699)
	16-191, gnl\|rheMac2\|chr7 (52970346-52970501)
	16-191, gnl\|rn3\|chr8 (61956911-61956756)
	16-191, gnl\|tetNig1\|chr13 (7412697-7412851)
	16-191, gnl\|xenTro1\|scaffold_62 (7248-7395)