Non-Coding RNA Search

Utr2-C0001811_F01

Sequence:


               
               TTAAAGATGAATTTCTCAAGTCTAGGGATTGAGGTCAGACTTTTCTGGATTCATATCTTT
GGTTCTGCCACTTATTAGCTTTAGAGTCTAAGGCATGTTAACCTGTTTGCATCTCAATTT
CCTTACCTGTTTAATGGGGATAATAACCACCTAATAGGGCTGTTAAGGTTAAAAGAGATT
ATCATGTAAAGTACTTAACACAGCATAAAGTACTTAGCCCATAGTAAATCCACAGTAAAC
ATTTGTAATTACTTATGATTTAAGCTCTTTAAAAATCTTTTGCTAGATTTTGCTAGATAG
ATTCCTAACTGTGAAGATAGAAACATAGCGggagttcccgttgtggcgcagtggttaacg
aatccgactaggaaccatgaggttgtgggttcggtccctgcccttgctcagtgggttaag
gatccggcgttgccgtgagctgtggtgtaggttgcagacgcggctcgggtcccagttgcg
gtgcctctggTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAGATGAATTTCTCAAGTCTAGGGATTGAGGTCAGACTTTTCTGGATTCATATCTTT
GGTTCTGCCACTTATTAGCTTTAGAGTCTAAGGCATGTTAACCTGTTTGCATCTCAATTT
CCTTACCTGTTTAATGGGGATAATAACCACCTAATAGGGCTGTTAAGGTTAAAAGAGATT
ATCATGTAAAGTACTTAACACAGCATAAAGTACTTAGCCCATAGTAAATCCACAGTAAAC
ATTTGTAATTACTTATGATTTAAGCTCTTTAAAAATCTTTTGCTAGATTTTGCTAGATAG
ATTCCTAACTGTGAAGATAGAAACATAGCGggagttcccgttgtggcgcagtggttaacg
aatccgactaggaaccatgaggttgtgggttcggtccctgcccttgctcagtgggttaag
gatccggcgttgccgtgagctgtggtgtaggttgcagacgcggctcgggtcccagttgcg
gtgcctctggTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-113, + strand, RNAz p=0.959759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, + strand, RNAz p=0.959759

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-332, gnl|bosTau2|chr3 (24598499-24598816)
               

               
               1-332, gnl|canFam2|chr17 (54604251-54604544)
               

               
               1-332, gnl|dasNov1|scaffold_3473 (43046-43309)
               

               
               1-332, gnl|hg17|chr1 (113950631-113950919)
               

               
               1-332, gnl|Hg17|chr1 (113950990-113950673)
               

               
               1-332, gnl|loxAfr1|scaffold_79994 (7346-7080)
               

               
               1-332, gnl|panTro1|chr1 (113738118-113738406)
               

               
               1-332, gnl|rheMac2|chr1 (116680281-116680562)
               

               
               1-332, gnl|rn3|chr2 (199205198-199204996)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-332, gnl|bosTau2|chr3 (24598499-24598816)
               

               
               1-332, gnl|canFam2|chr17 (54604251-54604544)
               

               
               1-332, gnl|dasNov1|scaffold_3473 (43046-43309)
               

               
               1-332, gnl|hg17|chr1 (113950631-113950919)
               

               
               1-332, gnl|Hg17|chr1 (113950990-113950673)
               

               
               1-332, gnl|loxAfr1|scaffold_79994 (7346-7080)
               

               
               1-332, gnl|panTro1|chr1 (113738118-113738406)
               

               
               1-332, gnl|rheMac2|chr1 (116680281-116680562)
               

               
               1-332, gnl|rn3|chr2 (199205198-199204996)

	1-332, gnl\|bosTau2\|chr3 (24598499-24598816)
	1-332, gnl\|canFam2\|chr17 (54604251-54604544)
	1-332, gnl\|dasNov1\|scaffold_3473 (43046-43309)
	1-332, gnl\|hg17\|chr1 (113950631-113950919)
	1-332, gnl\|Hg17\|chr1 (113950990-113950673)
	1-332, gnl\|loxAfr1\|scaffold_79994 (7346-7080)
	1-332, gnl\|panTro1\|chr1 (113738118-113738406)
	1-332, gnl\|rheMac2\|chr1 (116680281-116680562)
	1-332, gnl\|rn3\|chr2 (199205198-199204996)