Non-Coding RNA Search

Utr2-C0001811_M16

Sequence:


               
               GCTGACCTCACGAGATCCCATCCTTGGCCATGCGAGATTTTTAAGATCTGGGAGCTGAAC
TTGTATCATTGGGCTCTGGTGCAAGACAGACCTCTCCTGCTTACTGGCCAGGTGACCCTG
GGCAGACCATTTAAACTCTCAGAGCCGGAGTTCCGTTCTAGATCGCGACTGGAGTTTTTT
TTTTTTTTTTTTAATTACCGCAAAATCCAGCTGTGGTAAACTGACCATTTTATCATTACT
ATTTTTTTACTTGTAGCAACAGCATTTTACTCCTTAAAAAAAGAGAGAGAGAAAATCTGC
TTTCTGGACTTGTAAACTCTGGTGGAGAATCGTAGGTTTTCCCCTTGCTGTTTGCAGGTT
CAGACCCTAGACAAGTACTTGACCAAATCTGCATTTGCAGCCTCTCTCAGAAGCTGCTTT
AGCAATTTAACGTTTTTCTCTACCCAGACTCCCCAACCTCCAACAGCCAGAAAACAGGTT
GACTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGACCTCACGAGATCCCATCCTTGGCCATGCGAGATTTTTAAGATCTGGGAGCTGAAC
TTGTATCATTGGGCTCTGGTGCAAGACAGACCTCTCCTGCTTACTGGCCAGGTGACCCTG
GGCAGACCATTTAAACTCTCAGAGCCGGAGTTCCGTTCTAGATCGCGACTGGAGTTTTTT
TTTTTTTTTTTTAATTACCGCAAAATCCAGCTGTGGTAAACTGACCATTTTATCATTACT
ATTTTTTTACTTGTAGCAACAGCATTTTACTCCTTAAAAAAAGAGAGAGAGAAAATCTGC
TTTCTGGACTTGTAAACTCTGGTGGAGAATCGTAGGTTTTCCCCTTGCTGTTTGCAGGTT
CAGACCCTAGACAAGTACTTGACCAAATCTGCATTTGCAGCCTCTCTCAGAAGCTGCTTT
AGCAATTTAACGTTTTTCTCTACCCAGACTCCCCAACCTCCAACAGCCAGAAAACAGGTT
GACTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               177-487, + strand, RNAz p=0.998662

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               177-487, + strand, RNAz p=0.998662

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               372-495, - strand, RNAmicro p=1
               

               
               367-509, - strand, RNAmicro p=0.998055
               

               
               311-416, + strand, RNAmicro p=0.932071

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               372-495, - strand, RNAmicro p=1
               

               
               367-509, - strand, RNAmicro p=0.998055
               

               
               311-416, + strand, RNAmicro p=0.932071

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               196-487, DA224205 BRAWH3 Homo sapiens cDNA clone BRAWH3017193 5', mRNA 
(dbj|DA224205.1|), blast E-value=0, identity=92.15% 
               

               
               194-487, DA392593 BRTHA2 Homo sapiens cDNA clone BRTHA2030686 5', mRNA 
(dbj|DA392593.1|), blast E-value=0, identity=92.2% 
               

               
               194-471, DA434390 CTONG2 Homo sapiens cDNA clone CTONG2000742 5', mRNA 
(dbj|DA434390.1|), blast E-value=0, identity=92.11% 
               

               
               194-487, AGENCOURT_14371379 NIH_MGC_181 Homo sapiens cDNA clone 
(gb|CD516618.1|), blast E-value=0, identity=92.2% 
               

               
               194-487, 1155948 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN276756.1|), 
blast E-value=0, identity=90.82% 
               

               
               194-487, LB02953.CR_A20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE355525.1|), 
blast E-value=0, identity=90.82%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               196-487, DA224205 BRAWH3 Homo sapiens cDNA clone BRAWH3017193 5', mRNA 
(dbj|DA224205.1|), blast E-value=0, identity=92.15% 
               

               
               194-487, DA392593 BRTHA2 Homo sapiens cDNA clone BRTHA2030686 5', mRNA 
(dbj|DA392593.1|), blast E-value=0, identity=92.2% 
               

               
               194-471, DA434390 CTONG2 Homo sapiens cDNA clone CTONG2000742 5', mRNA 
(dbj|DA434390.1|), blast E-value=0, identity=92.11% 
               

               
               194-487, AGENCOURT_14371379 NIH_MGC_181 Homo sapiens cDNA clone 
(gb|CD516618.1|), blast E-value=0, identity=92.2% 
               

               
               194-487, 1155948 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN276756.1|), 
blast E-value=0, identity=90.82% 
               

               
               194-487, LB02953.CR_A20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE355525.1|), 
blast E-value=0, identity=90.82%

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               177-487, gnl|bosTau2|chr29 (33920908-33920602)
               

               
               177-487, gnl|canFam2|chr18 (55411987-55411745)
               

               
               177-487, gnl|dasNov1|scaffold_12601 (19415-19658)
               

               
               177-487, gnl|echTel1|scaffold_323783 (36057-35818)
               

               
               177-487, gnl|hg17|chr11 (64295033-64295272)
               

               
               177-487, gnl|Hg17|chr11 (64295361-64295059)
               

               
               177-487, gnl|mm7|chr19 (6265537-6265333)
               

               
               177-487, gnl|Mm7|chr19 (6265218-6265528)
               

               
               177-487, gnl|monDom2|scaffold_482 (23741-23485)
               

               
               177-487, gnl|oryCun1|scaffold_89929 (4128-3890)
               

               
               177-487, gnl|panTro1|chr9 (65512989-65513228)
               

               
               177-487, gnl|rheMac2|chr14 (9685773-9685532)
               

               
               177-487, gnl|rn3|chr1 (209311556-209311359)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-487, gnl|bosTau2|chr29 (33920908-33920602)
               

               
               177-487, gnl|canFam2|chr18 (55411987-55411745)
               

               
               177-487, gnl|dasNov1|scaffold_12601 (19415-19658)
               

               
               177-487, gnl|echTel1|scaffold_323783 (36057-35818)
               

               
               177-487, gnl|hg17|chr11 (64295033-64295272)
               

               
               177-487, gnl|Hg17|chr11 (64295361-64295059)
               

               
               177-487, gnl|mm7|chr19 (6265537-6265333)
               

               
               177-487, gnl|Mm7|chr19 (6265218-6265528)
               

               
               177-487, gnl|monDom2|scaffold_482 (23741-23485)
               

               
               177-487, gnl|oryCun1|scaffold_89929 (4128-3890)
               

               
               177-487, gnl|panTro1|chr9 (65512989-65513228)
               

               
               177-487, gnl|rheMac2|chr14 (9685773-9685532)
               

               
               177-487, gnl|rn3|chr1 (209311556-209311359)

	372-495, - strand, RNAmicro p=1
	367-509, - strand, RNAmicro p=0.998055
	311-416, + strand, RNAmicro p=0.932071

	196-487, DA224205 BRAWH3 Homo sapiens cDNA clone BRAWH3017193 5', mRNA (dbj\|DA224205.1\|), blast E-value=0, identity=92.15%
	194-487, DA392593 BRTHA2 Homo sapiens cDNA clone BRTHA2030686 5', mRNA (dbj\|DA392593.1\|), blast E-value=0, identity=92.2%
	194-471, DA434390 CTONG2 Homo sapiens cDNA clone CTONG2000742 5', mRNA (dbj\|DA434390.1\|), blast E-value=0, identity=92.11%
	194-487, AGENCOURT_14371379 NIH_MGC_181 Homo sapiens cDNA clone (gb\|CD516618.1\|), blast E-value=0, identity=92.2%
	194-487, 1155948 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN276756.1\|), blast E-value=0, identity=90.82%
	194-487, LB02953.CR_A20 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE355525.1\|), blast E-value=0, identity=90.82%

	177-487, gnl\|bosTau2\|chr29 (33920908-33920602)
	177-487, gnl\|canFam2\|chr18 (55411987-55411745)
	177-487, gnl\|dasNov1\|scaffold_12601 (19415-19658)
	177-487, gnl\|echTel1\|scaffold_323783 (36057-35818)
	177-487, gnl\|hg17\|chr11 (64295033-64295272)
	177-487, gnl\|Hg17\|chr11 (64295361-64295059)
	177-487, gnl\|mm7\|chr19 (6265537-6265333)
	177-487, gnl\|Mm7\|chr19 (6265218-6265528)
	177-487, gnl\|monDom2\|scaffold_482 (23741-23485)
	177-487, gnl\|oryCun1\|scaffold_89929 (4128-3890)
	177-487, gnl\|panTro1\|chr9 (65512989-65513228)
	177-487, gnl\|rheMac2\|chr14 (9685773-9685532)
	177-487, gnl\|rn3\|chr1 (209311556-209311359)