Non-Coding RNA Search

Utr2-C0001813_D03

Sequence:


               
               CTTTCTTTCTTTAAGGACAAGACACAAACAACAGAAAACCACTAGCATTTGTTAGTTCAG
CACGAAGCAGTGAGGTTGTGCTTTGTCTAGTGAATAGGGTGTGTGTGCCCACGTGTGTGT
GCATGTGTGTACTGGGGGAATGGGTGGCTACTCCATCTTTGCAAGAGGAACAAAGGAAGT
GATCAGCTGGCCCCTGGAGGCTCTGCAGCTGCCCTAGGGCAGTGCTGTCTATACCTGCTA
TGGGGAATTCATTTGCTTTGGATCCACTAGGTTCTCCCGTGCCCAAGAGTCTCTTCGCAC
TTGTTCCATTAGGCTTGGAACAACCCGATTGCCCTGGAGGACCTTCCCCCGTAGACAGGA
GGAGCTGTTCCCTGCTCTAGTGCACTTGATTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTTTCTTTAAGGACAAGACACAAACAACAGAAAACCACTAGCATTTGTTAGTTCAG
CACGAAGCAGTGAGGTTGTGCTTTGTCTAGTGAATAGGGTGTGTGTGCCCACGTGTGTGT
GCATGTGTGTACTGGGGGAATGGGTGGCTACTCCATCTTTGCAAGAGGAACAAAGGAAGT
GATCAGCTGGCCCCTGGAGGCTCTGCAGCTGCCCTAGGGCAGTGCTGTCTATACCTGCTA
TGGGGAATTCATTTGCTTTGGATCCACTAGGTTCTCCCGTGCCCAAGAGTCTCTTCGCAC
TTGTTCCATTAGGCTTGGAACAACCCGATTGCCCTGGAGGACCTTCCCCCGTAGACAGGA
GGAGCTGTTCCCTGCTCTAGTGCACTTGATTGTCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               127-245, - strand, RNAz p=0.649833
               

               
               291-395, - strand, RNAz p=0.519048

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-245, - strand, RNAz p=0.649833
               

               
               291-395, - strand, RNAz p=0.519048

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-395, gnl|bosTau2|chr7 (40083558-40083174)
               

               
               13-395, gnl|Hg17|chr5 (146812304-146811923)
               

               
               13-395, gnl|Mm7|chr18 (43769338-43769003)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-395, gnl|bosTau2|chr7 (40083558-40083174)
               

               
               13-395, gnl|Hg17|chr5 (146812304-146811923)
               

               
               13-395, gnl|Mm7|chr18 (43769338-43769003)

	127-245, - strand, RNAz p=0.649833
	291-395, - strand, RNAz p=0.519048

	13-395, gnl\|bosTau2\|chr7 (40083558-40083174)
	13-395, gnl\|Hg17\|chr5 (146812304-146811923)
	13-395, gnl\|Mm7\|chr18 (43769338-43769003)