Non-Coding RNA Search

Utr2-C0001813_L08

Sequence:


               
               GACAAATTGGACTCGTGTGATGTTGGATATAACTTCCTCGTGGGCCAGGATGGTGTCATC
TATGAAGGAGTAGGCTGGAGTGTCCAAGGCTCCCACACCCCTGGCTACAATGACATCGCT
CTGGGCCTCGCCTTCATGGGCACCTTCTCAGATACTCCACCCAATGCTGCAGCGCTGGAG
GCAGCTCAGAACCTGATCCAGTGCTCCGTGGTCAGGGGGTACCTGGATCCCAACTACCTG
CTGGTGGGGCACAGTGATGTGGCCAATGATCCATCTCCTGGGTGGGCTTTGTACAACATC
ATTAAGACTTGGCCTCATTTCAGACACTGAGGGAGCCCCTGCTTCTTCTGAGACCACCCC
CTCCCCCCAGCCTGGCTGCGGGGACTCCCCTTCCTTACCTCATCTGGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAATTGGACTCGTGTGATGTTGGATATAACTTCCTCGTGGGCCAGGATGGTGTCATC
TATGAAGGAGTAGGCTGGAGTGTCCAAGGCTCCCACACCCCTGGCTACAATGACATCGCT
CTGGGCCTCGCCTTCATGGGCACCTTCTCAGATACTCCACCCAATGCTGCAGCGCTGGAG
GCAGCTCAGAACCTGATCCAGTGCTCCGTGGTCAGGGGGTACCTGGATCCCAACTACCTG
CTGGTGGGGCACAGTGATGTGGCCAATGATCCATCTCCTGGGTGGGCTTTGTACAACATC
ATTAAGACTTGGCCTCATTTCAGACACTGAGGGAGCCCCTGCTTCTTCTGAGACCACCCC
CTCCCCCCAGCCTGGCTGCGGGGACTCCCCTTCCTTACCTCATCTGGGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51247361|pdb|1SK3|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51247361|pdb|1SK3|A

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               188-346, - strand, RNAz p=0.9917
               

               
               247-401, - strand, RNAz p=0.967469

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-346, - strand, RNAz p=0.9917
               

               
               247-401, - strand, RNAz p=0.967469

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_052891, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_052891, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               149-411, gnl|bosTau2|chr3 (2461807-2462070)
               

               
               149-411, gnl|dasNov1|scaffold_55506 (12549-12300)
               

               
               149-411, gnl|echTel1|scaffold_163244 (2860-3097)
               

               
               149-411, gnl|hg17|chr1 (150083399-150083656)
               

               
               149-411, gnl|Hg17|chr1 (150083686-150083429)
               

               
               149-411, gnl|loxAfr1|scaffold_49402 (21776-21523)
               

               
               149-411, gnl|mm7|chr3 (92065670-92065409)
               

               
               149-411, gnl|Mm7|chr3 (92065377-92065629)
               

               
               149-411, gnl|monDom2|scaffold_59 (4793341-4793079)
               

               
               149-411, gnl|oryCun1|scaffold_197479 (5094-4848)
               

               
               149-411, gnl|panTro1|chr1_random (23998794-23998525)
               

               
               149-411, gnl|rheMac2|chr1 (131816352-131816609)
               

               
               149-411, gnl|rn3|chr2 (184834911-184834649)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-411, gnl|bosTau2|chr3 (2461807-2462070)
               

               
               149-411, gnl|dasNov1|scaffold_55506 (12549-12300)
               

               
               149-411, gnl|echTel1|scaffold_163244 (2860-3097)
               

               
               149-411, gnl|hg17|chr1 (150083399-150083656)
               

               
               149-411, gnl|Hg17|chr1 (150083686-150083429)
               

               
               149-411, gnl|loxAfr1|scaffold_49402 (21776-21523)
               

               
               149-411, gnl|mm7|chr3 (92065670-92065409)
               

               
               149-411, gnl|Mm7|chr3 (92065377-92065629)
               

               
               149-411, gnl|monDom2|scaffold_59 (4793341-4793079)
               

               
               149-411, gnl|oryCun1|scaffold_197479 (5094-4848)
               

               
               149-411, gnl|panTro1|chr1_random (23998794-23998525)
               

               
               149-411, gnl|rheMac2|chr1 (131816352-131816609)
               

               
               149-411, gnl|rn3|chr2 (184834911-184834649)

	188-346, - strand, RNAz p=0.9917
	247-401, - strand, RNAz p=0.967469

	149-411, gnl\|bosTau2\|chr3 (2461807-2462070)
	149-411, gnl\|dasNov1\|scaffold_55506 (12549-12300)
	149-411, gnl\|echTel1\|scaffold_163244 (2860-3097)
	149-411, gnl\|hg17\|chr1 (150083399-150083656)
	149-411, gnl\|Hg17\|chr1 (150083686-150083429)
	149-411, gnl\|loxAfr1\|scaffold_49402 (21776-21523)
	149-411, gnl\|mm7\|chr3 (92065670-92065409)
	149-411, gnl\|Mm7\|chr3 (92065377-92065629)
	149-411, gnl\|monDom2\|scaffold_59 (4793341-4793079)
	149-411, gnl\|oryCun1\|scaffold_197479 (5094-4848)
	149-411, gnl\|panTro1\|chr1_random (23998794-23998525)
	149-411, gnl\|rheMac2\|chr1 (131816352-131816609)
	149-411, gnl\|rn3\|chr2 (184834911-184834649)