Non-Coding RNA Search

Utr2-C0001813_L23

Sequence:


               
               GTCTGGGACGGAGAAGGAGAAGGGCCAGTGCGGCATTGGAAAGTCCTGTTTATGCAACCG
CTTCGTGCGCCCAAGTGCTGACGAATTTCACTTGGACCATACCTCTGTCCTTAGCACCAG
TGACTTTGGTGGGCGAGTGGTCAATAATGACCACTTTCTCTATTGGGGAGAAGTTAGCCG
TTCCCTGGAGGATTGTGTGGAATGTAAGATGCACATTGTGGAGCAGACTGAATTCATTGA
TGATCAGACTTTTCAACCTCATCGAAGTACGGCCCTACAGCCCTATATCAAGAGAGCTGC
TGCAACCAAGCTCGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGGGACGGAGAAGGAGAAGGGCCAGTGCGGCATTGGAAAGTCCTGTTTATGCAACCG
CTTCGTGCGCCCAAGTGCTGACGAATTTCACTTGGACCATACCTCTGTCCTTAGCACCAG
TGACTTTGGTGGGCGAGTGGTCAATAATGACCACTTTCTCTATTGGGGAGAAGTTAGCCG
TTCCCTGGAGGATTGTGTGGAATGTAAGATGCACATTGTGGAGCAGACTGAATTCATTGA
TGATCAGACTTTTCAACCTCATCGAAGTACGGCCCTACAGCCCTATATCAAGAGAGCTGC
TGCAACCAAGCTCGCATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-239, + strand, RNAz p=0.949853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-239, + strand, RNAz p=0.949853

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-318, gnl|bosTau2|chr18 (46571760-46572077)
               

               
               1-318, gnl|canFam2|chr1 (111919768-111919029)
               

               
               1-318, gnl|danRer3|chr5 (39377361-39378085)
               

               
               1-318, gnl|dasNov1|scaffold_16162 (7894-8588)
               

               
               1-318, gnl|echTel1|scaffold_293914 (9572-8833)
               

               
               1-318, gnl|fr1|chrUn (87187710-87186966)
               

               
               1-318, gnl|galGal2|chrUn (102126217-102125495)
               

               
               1-318, gnl|hg17|chr19 (52113733-52114472)
               

               
               1-318, gnl|Hg17|chr19 (52113835-52114152)
               

               
               1-318, gnl|loxAfr1|scaffold_12200 (4106-4845)
               

               
               1-318, gnl|mm7|chr7 (14327224-14326485)
               

               
               1-318, gnl|Mm7|chr7 (14327120-14326803)
               

               
               1-318, gnl|monDom2|scaffold_149 (1692178-1691441)
               

               
               1-318, gnl|oryCun1|scaffold_203624 (47856-47117)
               

               
               1-318, gnl|panTro1|chr20 (49422979-49423718)
               

               
               1-318, gnl|rheMac2|chr19 (53243678-53244417)
               

               
               1-318, gnl|rn3|chr1 (76902308-76901569)
               

               
               1-318, gnl|tetNig1|chr16 (1466785-1466061)
               

               
               1-318, gnl|xenTro1|scaffold_105 (1386255-1386997)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-318, gnl|bosTau2|chr18 (46571760-46572077)
               

               
               1-318, gnl|canFam2|chr1 (111919768-111919029)
               

               
               1-318, gnl|danRer3|chr5 (39377361-39378085)
               

               
               1-318, gnl|dasNov1|scaffold_16162 (7894-8588)
               

               
               1-318, gnl|echTel1|scaffold_293914 (9572-8833)
               

               
               1-318, gnl|fr1|chrUn (87187710-87186966)
               

               
               1-318, gnl|galGal2|chrUn (102126217-102125495)
               

               
               1-318, gnl|hg17|chr19 (52113733-52114472)
               

               
               1-318, gnl|Hg17|chr19 (52113835-52114152)
               

               
               1-318, gnl|loxAfr1|scaffold_12200 (4106-4845)
               

               
               1-318, gnl|mm7|chr7 (14327224-14326485)
               

               
               1-318, gnl|Mm7|chr7 (14327120-14326803)
               

               
               1-318, gnl|monDom2|scaffold_149 (1692178-1691441)
               

               
               1-318, gnl|oryCun1|scaffold_203624 (47856-47117)
               

               
               1-318, gnl|panTro1|chr20 (49422979-49423718)
               

               
               1-318, gnl|rheMac2|chr19 (53243678-53244417)
               

               
               1-318, gnl|rn3|chr1 (76902308-76901569)
               

               
               1-318, gnl|tetNig1|chr16 (1466785-1466061)
               

               
               1-318, gnl|xenTro1|scaffold_105 (1386255-1386997)

	1-318, gnl\|bosTau2\|chr18 (46571760-46572077)
	1-318, gnl\|canFam2\|chr1 (111919768-111919029)
	1-318, gnl\|danRer3\|chr5 (39377361-39378085)
	1-318, gnl\|dasNov1\|scaffold_16162 (7894-8588)
	1-318, gnl\|echTel1\|scaffold_293914 (9572-8833)
	1-318, gnl\|fr1\|chrUn (87187710-87186966)
	1-318, gnl\|galGal2\|chrUn (102126217-102125495)
	1-318, gnl\|hg17\|chr19 (52113733-52114472)
	1-318, gnl\|Hg17\|chr19 (52113835-52114152)
	1-318, gnl\|loxAfr1\|scaffold_12200 (4106-4845)
	1-318, gnl\|mm7\|chr7 (14327224-14326485)
	1-318, gnl\|Mm7\|chr7 (14327120-14326803)
	1-318, gnl\|monDom2\|scaffold_149 (1692178-1691441)
	1-318, gnl\|oryCun1\|scaffold_203624 (47856-47117)
	1-318, gnl\|panTro1\|chr20 (49422979-49423718)
	1-318, gnl\|rheMac2\|chr19 (53243678-53244417)
	1-318, gnl\|rn3\|chr1 (76902308-76901569)
	1-318, gnl\|tetNig1\|chr16 (1466785-1466061)
	1-318, gnl\|xenTro1\|scaffold_105 (1386255-1386997)