Non-Coding RNA Search

Utr2-C0001815_N05

Sequence:


               
               AAGCTAACTTCCGCCTCTCCCCGTCACTTTTCCCCGGCTCTCCGCAGCTGGGTTGGTTCA
CCTTTTGAGAAGCTCTCTCCTGGCACTTGGAGTTGGGGGCTGCCACCTAGTGGAAGATGA
CGGAGCTTAGGGGCCTGAAGAGGCTCCTGATCTCCCTCTCTGCTGGCGGTGTGCGGTGGT
GGTGGCACCGTGGGAACCCTACTGAGAGGAGTCGGGTCCCCTCCCCCCTCCCTTGTCCTG
AGTGTGCGTGCGCGTGCATGCATGTGTGTTCGGTCGGCGCATGCATAACCTCAGGATGCC
CAGGAAGGGGAATGTGCATAAATGAATCACTAGGGTGCTGAGTGGTCCTCGGTGTGTGCA
GACAGGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTAACTTCCGCCTCTCCCCGTCACTTTTCCCCGGCTCTCCGCAGCTGGGTTGGTTCA
CCTTTTGAGAAGCTCTCTCCTGGCACTTGGAGTTGGGGGCTGCCACCTAGTGGAAGATGA
CGGAGCTTAGGGGCCTGAAGAGGCTCCTGATCTCCCTCTCTGCTGGCGGTGTGCGGTGGT
GGTGGCACCGTGGGAACCCTACTGAGAGGAGTCGGGTCCCCTCCCCCCTCCCTTGTCCTG
AGTGTGCGTGCGCGTGCATGCATGTGTGTTCGGTCGGCGCATGCATAACCTCAGGATGCC
CAGGAAGGGGAATGTGCATAAATGAATCACTAGGGTGCTGAGTGGTCCTCGGTGTGTGCA
GACAGGCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               195-300, - strand, RNAz p=0.873576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-300, - strand, RNAz p=0.873576

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-367, gnl|bosTau2|chr19 (37966082-37965695)
               

               
               3-367, gnl|canFam2|chr9 (22402252-22402004)
               

               
               3-367, gnl|dasNov1|scaffold_138344 (4439-4139)
               

               
               3-367, gnl|hg17|chr17 (39778668-39778927)
               

               
               3-367, gnl|Hg17|chr17 (39778710-39779049)
               

               
               3-367, gnl|loxAfr1|scaffold_126257 (1420-1124)
               

               
               3-367, gnl|mm7|chr11 (102540068-102540317)
               

               
               3-367, gnl|oryCun1|scaffold_203939 (653-900)
               

               
               3-367, gnl|panTro1|chr19 (42992687-42992946)
               

               
               3-367, gnl|rheMac2|chr16 (54443584-54443843)
               

               
               3-367, gnl|rn3|chr10 (91551015-91551266)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-367, gnl|bosTau2|chr19 (37966082-37965695)
               

               
               3-367, gnl|canFam2|chr9 (22402252-22402004)
               

               
               3-367, gnl|dasNov1|scaffold_138344 (4439-4139)
               

               
               3-367, gnl|hg17|chr17 (39778668-39778927)
               

               
               3-367, gnl|Hg17|chr17 (39778710-39779049)
               

               
               3-367, gnl|loxAfr1|scaffold_126257 (1420-1124)
               

               
               3-367, gnl|mm7|chr11 (102540068-102540317)
               

               
               3-367, gnl|oryCun1|scaffold_203939 (653-900)
               

               
               3-367, gnl|panTro1|chr19 (42992687-42992946)
               

               
               3-367, gnl|rheMac2|chr16 (54443584-54443843)
               

               
               3-367, gnl|rn3|chr10 (91551015-91551266)

	3-367, gnl\|bosTau2\|chr19 (37966082-37965695)
	3-367, gnl\|canFam2\|chr9 (22402252-22402004)
	3-367, gnl\|dasNov1\|scaffold_138344 (4439-4139)
	3-367, gnl\|hg17\|chr17 (39778668-39778927)
	3-367, gnl\|Hg17\|chr17 (39778710-39779049)
	3-367, gnl\|loxAfr1\|scaffold_126257 (1420-1124)
	3-367, gnl\|mm7\|chr11 (102540068-102540317)
	3-367, gnl\|oryCun1\|scaffold_203939 (653-900)
	3-367, gnl\|panTro1\|chr19 (42992687-42992946)
	3-367, gnl\|rheMac2\|chr16 (54443584-54443843)
	3-367, gnl\|rn3\|chr10 (91551015-91551266)