Non-Coding RNA Search

blip-UMC-pblivp1-009-g02

Sequence:


               
               AGTTTAAATCCTAAGCAACAAAGGAAGATGCTTTTGAAGACTTACTACTGTTTTCATAAT
TAAACATTTTGGATTATAACGTCACATCCCTCAAGCTAAGGGAACCAAATTCAAAAAGCT
ACTCTGAACATTTGCAGTTACCCTACAGAATACGACGAAGTCTTACGATTGGGAAATGAT
TCCCAACATGGATTCAATAGGCAAGTCAACATGCCACACCACTTTTCCCCAGGTTTAGAG
TAGATATGTATTTAGGTAAATCACAGAGCTTTAACTATTCATGTTAGATTCCCATCTATG
TCCAAGTTAGTAACAAGTGTTCCCACTAGAGCCCATTTTAAAAATTTTCTAAAATCACAC
TGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTAAATCCTAAGCAACAAAGGAAGATGCTTTTGAAGACTTACTACTGTTTTCATAAT
TAAACATTTTGGATTATAACGTCACATCCCTCAAGCTAAGGGAACCAAATTCAAAAAGCT
ACTCTGAACATTTGCAGTTACCCTACAGAATACGACGAAGTCTTACGATTGGGAAATGAT
TCCCAACATGGATTCAATAGGCAAGTCAACATGCCACACCACTTTTCCCCAGGTTTAGAG
TAGATATGTATTTAGGTAAATCACAGAGCTTTAACTATTCATGTTAGATTCCCATCTATG
TCCAAGTTAGTAACAAGTGTTCCCACTAGAGCCCATTTTAAAAATTTTCTAAAATCACAC
TGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-196, - strand, RNAz p=0.530387

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.530387

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-363, gnl|bosTau2|chr3 (77679923-77679563)
               

               
               1-363, gnl|canFam2|chr15 (9900801-9900001)
               

               
               1-363, gnl|dasNov1|scaffold_175359 (3088-3842)
               

               
               1-363, gnl|echTel1|scaffold_285155 (56590-55827)
               

               
               1-363, gnl|galGal2|chr23 (3919708-3918979)
               

               
               1-363, gnl|hg17|chr1 (35314816-35315560)
               

               
               1-363, gnl|Hg17|chr1 (35314982-35315333)
               

               
               1-363, gnl|loxAfr1|scaffold_3833 (62590-63382)
               

               
               1-363, gnl|mm7|chr4 (126478453-126477706)
               

               
               1-363, gnl|Mm7|chr4 (126478290-126477952)
               

               
               1-363, gnl|monDom2|scaffold_43 (15314849-15314005)
               

               
               1-363, gnl|oryCun1|scaffold_174021 (4657-5439)
               

               
               1-363, gnl|panTro1|chr1 (36085472-36086216)
               

               
               1-363, gnl|rheMac2|chr1 (37977415-37978158)
               

               
               1-363, gnl|rn3|chr5 (146482848-146482097)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-363, gnl|bosTau2|chr3 (77679923-77679563)
               

               
               1-363, gnl|canFam2|chr15 (9900801-9900001)
               

               
               1-363, gnl|dasNov1|scaffold_175359 (3088-3842)
               

               
               1-363, gnl|echTel1|scaffold_285155 (56590-55827)
               

               
               1-363, gnl|galGal2|chr23 (3919708-3918979)
               

               
               1-363, gnl|hg17|chr1 (35314816-35315560)
               

               
               1-363, gnl|Hg17|chr1 (35314982-35315333)
               

               
               1-363, gnl|loxAfr1|scaffold_3833 (62590-63382)
               

               
               1-363, gnl|mm7|chr4 (126478453-126477706)
               

               
               1-363, gnl|Mm7|chr4 (126478290-126477952)
               

               
               1-363, gnl|monDom2|scaffold_43 (15314849-15314005)
               

               
               1-363, gnl|oryCun1|scaffold_174021 (4657-5439)
               

               
               1-363, gnl|panTro1|chr1 (36085472-36086216)
               

               
               1-363, gnl|rheMac2|chr1 (37977415-37978158)
               

               
               1-363, gnl|rn3|chr5 (146482848-146482097)

	1-363, gnl\|bosTau2\|chr3 (77679923-77679563)
	1-363, gnl\|canFam2\|chr15 (9900801-9900001)
	1-363, gnl\|dasNov1\|scaffold_175359 (3088-3842)
	1-363, gnl\|echTel1\|scaffold_285155 (56590-55827)
	1-363, gnl\|galGal2\|chr23 (3919708-3918979)
	1-363, gnl\|hg17\|chr1 (35314816-35315560)
	1-363, gnl\|Hg17\|chr1 (35314982-35315333)
	1-363, gnl\|loxAfr1\|scaffold_3833 (62590-63382)
	1-363, gnl\|mm7\|chr4 (126478453-126477706)
	1-363, gnl\|Mm7\|chr4 (126478290-126477952)
	1-363, gnl\|monDom2\|scaffold_43 (15314849-15314005)
	1-363, gnl\|oryCun1\|scaffold_174021 (4657-5439)
	1-363, gnl\|panTro1\|chr1 (36085472-36086216)
	1-363, gnl\|rheMac2\|chr1 (37977415-37978158)
	1-363, gnl\|rn3\|chr5 (146482848-146482097)