Non-Coding RNA Search

gvo-UMC-pgvo2-007-g01

Sequence:


               
               TGAGAGAAATGGTCTCTTGGGCTCCATCCATGAGGACAAGAATGCTCTCGGCCTCTTGGC
TTTAGGGGAGGAGACCAACGAGGAGGACGAGGCGGAGAGTGACAACCAGAGTGTCTGCAG
CTCAAGTGAGCTTCTTAAGAACCTGCACCTGGACATCAGGGCACTGGGGGGTGACTTTGA
GTGTGAGGAATCTCCAAGAACAAGCCAGCCAGAGGAGAAAAAGGACGTTTCTCTTGATTC
AGATGCTGCCGGCCCCCCGACTCCTGACAAGGTCTTTAGCCAAGGTGCAGACGACAGCCT
GAGCAGTGCCGATGGCAAAGGGCGACCTGGAAGAGGGGCACGTTGGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAGAAATGGTCTCTTGGGCTCCATCCATGAGGACAAGAATGCTCTCGGCCTCTTGGC
TTTAGGGGAGGAGACCAACGAGGAGGACGAGGCGGAGAGTGACAACCAGAGTGTCTGCAG
CTCAAGTGAGCTTCTTAAGAACCTGCACCTGGACATCAGGGCACTGGGGGGTGACTTTGA
GTGTGAGGAATCTCCAAGAACAAGCCAGCCAGAGGAGAAAAAGGACGTTTCTCTTGATTC
AGATGCTGCCGGCCCCCCGACTCCTGACAAGGTCTTTAGCCAAGGTGCAGACGACAGCCT
GAGCAGTGCCGATGGCAAAGGGCGACCTGGAAGAGGGGCACGTTGGCTCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               7-109, + strand, RNAz p=0.900946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-109, + strand, RNAz p=0.900946

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX648682, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX648682, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               7-109, gnl|bosTau2|chr15 (13626403-13626505)
               

               
               7-109, gnl|canFam2|chr5 (19270569-19270477)
               

               
               7-109, gnl|dasNov1|scaffold_16566 (14940-15031)
               

               
               7-109, gnl|echTel1|scaffold_294311 (46268-46185)
               

               
               7-109, gnl|galGal2|chr24 (4947642-4947723)
               

               
               7-109, gnl|hg17|chr11 (116738359-116738451)
               

               
               7-109, gnl|Hg17|chr11 (116738362-116738464)
               

               
               7-109, gnl|loxAfr1|scaffold_7234 (574-482)
               

               
               7-109, gnl|mm7|chr9 (45760873-45760781)
               

               
               7-109, gnl|Mm7|chr9 (45760868-45760766)
               

               
               7-109, gnl|monDom2|scaffold_2 (121936954-121936868)
               

               
               7-109, gnl|panTro1|chr9 (118741092-118741184)
               

               
               7-109, gnl|rheMac2|chr14 (115765620-115765712)
               

               
               7-109, gnl|rn3|chr8 (48782261-48782169)
               


               
               186-351, gnl|bosTau2|chr15 (13636667-13636829)
               

               
               186-351, gnl|Hg17|chr11 (116747004-116747172)
               

               
               186-351, gnl|Mm7|chr9 (45752554-45752389)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-109, gnl|bosTau2|chr15 (13626403-13626505)
               

               
               7-109, gnl|canFam2|chr5 (19270569-19270477)
               

               
               7-109, gnl|dasNov1|scaffold_16566 (14940-15031)
               

               
               7-109, gnl|echTel1|scaffold_294311 (46268-46185)
               

               
               7-109, gnl|galGal2|chr24 (4947642-4947723)
               

               
               7-109, gnl|hg17|chr11 (116738359-116738451)
               

               
               7-109, gnl|Hg17|chr11 (116738362-116738464)
               

               
               7-109, gnl|loxAfr1|scaffold_7234 (574-482)
               

               
               7-109, gnl|mm7|chr9 (45760873-45760781)
               

               
               7-109, gnl|Mm7|chr9 (45760868-45760766)
               

               
               7-109, gnl|monDom2|scaffold_2 (121936954-121936868)
               

               
               7-109, gnl|panTro1|chr9 (118741092-118741184)
               

               
               7-109, gnl|rheMac2|chr14 (115765620-115765712)
               

               
               7-109, gnl|rn3|chr8 (48782261-48782169)
               


               
               186-351, gnl|bosTau2|chr15 (13636667-13636829)
               

               
               186-351, gnl|Hg17|chr11 (116747004-116747172)
               

               
               186-351, gnl|Mm7|chr9 (45752554-45752389)

	7-109, gnl\|bosTau2\|chr15 (13626403-13626505)
	7-109, gnl\|canFam2\|chr5 (19270569-19270477)
	7-109, gnl\|dasNov1\|scaffold_16566 (14940-15031)
	7-109, gnl\|echTel1\|scaffold_294311 (46268-46185)
	7-109, gnl\|galGal2\|chr24 (4947642-4947723)
	7-109, gnl\|hg17\|chr11 (116738359-116738451)
	7-109, gnl\|Hg17\|chr11 (116738362-116738464)
	7-109, gnl\|loxAfr1\|scaffold_7234 (574-482)
	7-109, gnl\|mm7\|chr9 (45760873-45760781)
	7-109, gnl\|Mm7\|chr9 (45760868-45760766)
	7-109, gnl\|monDom2\|scaffold_2 (121936954-121936868)
	7-109, gnl\|panTro1\|chr9 (118741092-118741184)
	7-109, gnl\|rheMac2\|chr14 (115765620-115765712)
	7-109, gnl\|rn3\|chr8 (48782261-48782169)

	186-351, gnl\|bosTau2\|chr15 (13636667-13636829)
	186-351, gnl\|Hg17\|chr11 (116747004-116747172)
	186-351, gnl\|Mm7\|chr9 (45752554-45752389)