Non-Coding RNA Search

gvo-UMC-pgvo2-009-d04

Sequence:


               
               CTTGGGGTTTGTACTCAAAGGTAGGGGCTGCAGTTTCTCTTTATACCTTGAACAAAAGGC
ATATGTAGGTAGAGAGAGAGAGAGAAATGAAAGATGAGAGAGATCGGGGGAAAGAAAAAA
ATGGTGGTGGTGGTGGTGGTGGTGGTGGGAAAAGGCATTGGCTCCGTTATATTGAACACT
CAACTTCCCATGGTTTTCCTGCTTAATCCTGGGAGAATTCATTCCTTGCTTTATTGGGGG
GGGGGCGGACACCCCACACGCTGTGTCTCATTTGCAGACTCTGTGTTAGGGAGGATTAAA
GAATCCCTTCTGAGAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGGGTTTGTACTCAAAGGTAGGGGCTGCAGTTTCTCTTTATACCTTGAACAAAAGGC
ATATGTAGGTAGAGAGAGAGAGAGAAATGAAAGATGAGAGAGATCGGGGGAAAGAAAAAA
ATGGTGGTGGTGGTGGTGGTGGTGGTGGGAAAAGGCATTGGCTCCGTTATATTGAACACT
CAACTTCCCATGGTTTTCCTGCTTAATCCTGGGAGAATTCATTCCTTGCTTTATTGGGGG
GGGGGCGGACACCCCACACGCTGTGTCTCATTTGCAGACTCTGTGTTAGGGAGGATTAAA
GAATCCCTTCTGAGAAATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-90, + strand, RNAz p=0.954581
               

               
               202-319, - strand, RNAz p=0.532015

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, + strand, RNAz p=0.954581
               

               
               202-319, - strand, RNAz p=0.532015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-319, gnl|bosTau2|chr3 (8950958-8950650)
               

               
               1-319, gnl|Hg17|chr1 (151654600-151654231)
               

               
               1-319, gnl|Mm7|chr3 (89648042-89648311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-319, gnl|bosTau2|chr3 (8950958-8950650)
               

               
               1-319, gnl|Hg17|chr1 (151654600-151654231)
               

               
               1-319, gnl|Mm7|chr3 (89648042-89648311)

	1-90, + strand, RNAz p=0.954581
	202-319, - strand, RNAz p=0.532015

	1-319, gnl\|bosTau2\|chr3 (8950958-8950650)
	1-319, gnl\|Hg17\|chr1 (151654600-151654231)
	1-319, gnl\|Mm7\|chr3 (89648042-89648311)