Non-Coding RNA Search

gvo-UMC-pgvo4-002-e01

Sequence:


               
               AAAGAAACAATTAATTTGACTTTTGTAGTTAGATACATTGCATCTCTTGACTTTCCCAAG
CTTCTTCCTTCTCCTGAAACCAATTCGTGCAAGAGAAGCCAAAAGTATCTTGCTCTATAC
TTTATATTTTACGAAGTGACTTCCACAGAGGAAACCATTGTGAACCAATAAAATTAATCA
TTAAATTTTGTCGTTCTTGCCATTTGAGTTCAATTCTTTTGTCTTTGCCATAGAATTCAG
GAGTTGGGGCTACAGGCATAAGTTTTGAATGCCCTGGCTGAGCCACCCTGAAAGTCCCAT
TTATTTCCCCTTTGATGCAAGTAGACATGGCTAATCTGGAAGCTTATCCCAAACTGAAGT
CCCTAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAACAATTAATTTGACTTTTGTAGTTAGATACATTGCATCTCTTGACTTTCCCAAG
CTTCTTCCTTCTCCTGAAACCAATTCGTGCAAGAGAAGCCAAAAGTATCTTGCTCTATAC
TTTATATTTTACGAAGTGACTTCCACAGAGGAAACCATTGTGAACCAATAAAATTAATCA
TTAAATTTTGTCGTTCTTGCCATTTGAGTTCAATTCTTTTGTCTTTGCCATAGAATTCAG
GAGTTGGGGCTACAGGCATAAGTTTTGAATGCCCTGGCTGAGCCACCCTGAAAGTCCCAT
TTATTTCCCCTTTGATGCAAGTAGACATGGCTAATCTGGAAGCTTATCCCAAACTGAAGT
CCCTAGGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               128-220, - strand, RNAz p=0.514243

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-220, - strand, RNAz p=0.514243

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-365, gnl|bosTau2|chr2 (57889173-57888811)
               

               
               1-365, gnl|canFam2|chr37 (18516873-18517604)
               

               
               1-365, gnl|dasNov1|scaffold_6822 (57486-56717)
               

               
               1-365, gnl|hg17|chr2 (207766885-207767611)
               

               
               1-365, gnl|Hg17|chr2 (207767210-207767573)
               

               
               1-365, gnl|loxAfr1|scaffold_12077 (4-756)
               

               
               1-365, gnl|mm7|chr1 (64271711-64272410)
               

               
               1-365, gnl|Mm7|chr1 (64272005-64272353)
               

               
               1-365, gnl|monDom2|scaffold_39 (16121250-16120419)
               

               
               1-365, gnl|oryCun1|scaffold_207884 (296010-295303)
               

               
               1-365, gnl|panTro1|chr13 (97813515-97814238)
               

               
               1-365, gnl|rheMac2|chr12 (70971220-70971944)
               

               
               1-365, gnl|rn3|chr9 (62835264-62835945)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-365, gnl|bosTau2|chr2 (57889173-57888811)
               

               
               1-365, gnl|canFam2|chr37 (18516873-18517604)
               

               
               1-365, gnl|dasNov1|scaffold_6822 (57486-56717)
               

               
               1-365, gnl|hg17|chr2 (207766885-207767611)
               

               
               1-365, gnl|Hg17|chr2 (207767210-207767573)
               

               
               1-365, gnl|loxAfr1|scaffold_12077 (4-756)
               

               
               1-365, gnl|mm7|chr1 (64271711-64272410)
               

               
               1-365, gnl|Mm7|chr1 (64272005-64272353)
               

               
               1-365, gnl|monDom2|scaffold_39 (16121250-16120419)
               

               
               1-365, gnl|oryCun1|scaffold_207884 (296010-295303)
               

               
               1-365, gnl|panTro1|chr13 (97813515-97814238)
               

               
               1-365, gnl|rheMac2|chr12 (70971220-70971944)
               

               
               1-365, gnl|rn3|chr9 (62835264-62835945)

	1-365, gnl\|bosTau2\|chr2 (57889173-57888811)
	1-365, gnl\|canFam2\|chr37 (18516873-18517604)
	1-365, gnl\|dasNov1\|scaffold_6822 (57486-56717)
	1-365, gnl\|hg17\|chr2 (207766885-207767611)
	1-365, gnl\|Hg17\|chr2 (207767210-207767573)
	1-365, gnl\|loxAfr1\|scaffold_12077 (4-756)
	1-365, gnl\|mm7\|chr1 (64271711-64272410)
	1-365, gnl\|Mm7\|chr1 (64272005-64272353)
	1-365, gnl\|monDom2\|scaffold_39 (16121250-16120419)
	1-365, gnl\|oryCun1\|scaffold_207884 (296010-295303)
	1-365, gnl\|panTro1\|chr13 (97813515-97814238)
	1-365, gnl\|rheMac2\|chr12 (70971220-70971944)
	1-365, gnl\|rn3\|chr9 (62835264-62835945)