Non-Coding RNA Search

gvo-UMC-pgvo4-003-e04

Sequence:


               
               CCCTATCTTCTCAAGCTCATGAGTTAATTTTTCAAGATCATTATTCATTTGTTGAGTCTT
CAATTTTTCACTGACCAAATCCTCTCGTAATGTAACCAAAGTTTTTATATCAATAGTTGC
TCTTTTCACAAGCTCCTTATTTTCTTTCTCTAATTCCTTTAGACGAATGCAGGATTCTTT
ATAAATACCCATCTCTTTGAAAAGGGCTTTGTTTTCTTTTTCTAAATTTCCAATTTTCAC
ATTATTTTCTTCTAATGTGGTATCTTTTATTTCTGCTTGCTGTCGGAGTCTCTTATTTTC
CTTCTCCAGTTGTTTCTTCCCCTTTTCCAGCTGAGAAGTCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTATCTTCTCAAGCTCATGAGTTAATTTTTCAAGATCATTATTCATTTGTTGAGTCTT
CAATTTTTCACTGACCAAATCCTCTCGTAATGTAACCAAAGTTTTTATATCAATAGTTGC
TCTTTTCACAAGCTCCTTATTTTCTTTCTCTAATTCCTTTAGACGAATGCAGGATTCTTT
ATAAATACCCATCTCTTTGAAAAGGGCTTTGTTTTCTTTTTCTAAATTTCCAATTTTCAC
ATTATTTTCTTCTAATGTGGTATCTTTTATTTCTGCTTGCTGTCGGAGTCTCTTATTTTC
CTTCTCCAGTTGTTTCTTCCCCTTTTCCAGCTGAGAAGTCTCTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-279, + strand, RNAz p=0.881181

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, + strand, RNAz p=0.881181

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               81-345, gnl|bosTau2|chr11 (20403127-20403391)
               

               
               81-345, gnl|canFam2|chr10 (59358948-59359239)
               

               
               81-345, gnl|danRer3|chr6 (2907084-2906804)
               

               
               81-345, gnl|echTel1|scaffold_304760 (55424-55715)
               

               
               81-345, gnl|fr1|chrUn (46963811-46963531)
               

               
               81-345, gnl|galGal2|chr3 (2312075-2311784)
               

               
               81-345, gnl|hg17|chr2 (55472875-55473166)
               

               
               81-345, gnl|Hg17|chr2 (55472880-55473144)
               

               
               81-345, gnl|loxAfr1|scaffold_7522 (8251-8542)
               

               
               81-345, gnl|mm7|chr11 (29416204-29415913)
               

               
               81-345, gnl|Mm7|chr11 (29416197-29415933)
               

               
               81-345, gnl|monDom2|scaffold_1 (18267606-18267897)
               

               
               81-345, gnl|oryCun1|scaffold_194117 (52523-52821)
               

               
               81-345, gnl|panTro1|chr12 (57629163-57629454)
               

               
               81-345, gnl|rheMac2|chr13 (55660165-55660456)
               

               
               81-345, gnl|rn3|chr14 (110507162-110506871)
               

               
               81-345, gnl|tetNig1|chr17 (10691909-10692189)
               

               
               81-345, gnl|xenTro1|scaffold_234 (715867-715576)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-345, gnl|bosTau2|chr11 (20403127-20403391)
               

               
               81-345, gnl|canFam2|chr10 (59358948-59359239)
               

               
               81-345, gnl|danRer3|chr6 (2907084-2906804)
               

               
               81-345, gnl|echTel1|scaffold_304760 (55424-55715)
               

               
               81-345, gnl|fr1|chrUn (46963811-46963531)
               

               
               81-345, gnl|galGal2|chr3 (2312075-2311784)
               

               
               81-345, gnl|hg17|chr2 (55472875-55473166)
               

               
               81-345, gnl|Hg17|chr2 (55472880-55473144)
               

               
               81-345, gnl|loxAfr1|scaffold_7522 (8251-8542)
               

               
               81-345, gnl|mm7|chr11 (29416204-29415913)
               

               
               81-345, gnl|Mm7|chr11 (29416197-29415933)
               

               
               81-345, gnl|monDom2|scaffold_1 (18267606-18267897)
               

               
               81-345, gnl|oryCun1|scaffold_194117 (52523-52821)
               

               
               81-345, gnl|panTro1|chr12 (57629163-57629454)
               

               
               81-345, gnl|rheMac2|chr13 (55660165-55660456)
               

               
               81-345, gnl|rn3|chr14 (110507162-110506871)
               

               
               81-345, gnl|tetNig1|chr17 (10691909-10692189)
               

               
               81-345, gnl|xenTro1|scaffold_234 (715867-715576)

	81-345, gnl\|bosTau2\|chr11 (20403127-20403391)
	81-345, gnl\|canFam2\|chr10 (59358948-59359239)
	81-345, gnl\|danRer3\|chr6 (2907084-2906804)
	81-345, gnl\|echTel1\|scaffold_304760 (55424-55715)
	81-345, gnl\|fr1\|chrUn (46963811-46963531)
	81-345, gnl\|galGal2\|chr3 (2312075-2311784)
	81-345, gnl\|hg17\|chr2 (55472875-55473166)
	81-345, gnl\|Hg17\|chr2 (55472880-55473144)
	81-345, gnl\|loxAfr1\|scaffold_7522 (8251-8542)
	81-345, gnl\|mm7\|chr11 (29416204-29415913)
	81-345, gnl\|Mm7\|chr11 (29416197-29415933)
	81-345, gnl\|monDom2\|scaffold_1 (18267606-18267897)
	81-345, gnl\|oryCun1\|scaffold_194117 (52523-52821)
	81-345, gnl\|panTro1\|chr12 (57629163-57629454)
	81-345, gnl\|rheMac2\|chr13 (55660165-55660456)
	81-345, gnl\|rn3\|chr14 (110507162-110506871)
	81-345, gnl\|tetNig1\|chr17 (10691909-10692189)
	81-345, gnl\|xenTro1\|scaffold_234 (715867-715576)