Non-Coding RNA Search

gvo-UMC-pgvo4-014-f06

Sequence:


               
               ATTTACGATCGTGATGGCTTCATCCAAAGTTTCTGTGTCCAGAACCACAAGAACTGGGCC
AAAAATCTCCTCTTTGTAACAGGTCATATTTGGCTGCCAGGAGTGATGCATCCAGAAAAG
AAGTCAGTATTTTATGCTTATTTGGTACTTTATAACCCATTGCTTACACAAACAACTTCT
ATGTTAGTAATCCCTTTTCACTTTAAACCACTATTAGAAAAAAGACCTTCCTTGTTGTGT
TCCATTCTCCAAGCTACTAATCATATAAATAACTTAAAATTCCTATTAATGATAACTACA
CTCCTTGCCTTAAAGCACTGTATTTTTAGGTCTCATGACCAATCACTAGCTTCCTCTTTT
ATGTCTGCACTATTTGTTTATACAATTGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTACGATCGTGATGGCTTCATCCAAAGTTTCTGTGTCCAGAACCACAAGAACTGGGCC
AAAAATCTCCTCTTTGTAACAGGTCATATTTGGCTGCCAGGAGTGATGCATCCAGAAAAG
AAGTCAGTATTTTATGCTTATTTGGTACTTTATAACCCATTGCTTACACAAACAACTTCT
ATGTTAGTAATCCCTTTTCACTTTAAACCACTATTAGAAAAAAGACCTTCCTTGTTGTGT
TCCATTCTCCAAGCTACTAATCATATAAATAACTTAAAATTCCTATTAATGATAACTACA
CTCCTTGCCTTAAAGCACTGTATTTTTAGGTCTCATGACCAATCACTAGCTTCCTCTTTT
ATGTCTGCACTATTTGTTTATACAATTGTAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.584577
               

               
               219-327, - strand, RNAz p=0.990615

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.584577
               

               
               219-327, - strand, RNAz p=0.990615

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-389, gnl|bosTau2|chr10 (60669391-60669787)
               

               
               1-389, gnl|Hg17|chr14 (73601724-73602133)
               

               
               1-389, gnl|Mm7|chr12 (82433911-82434261)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-389, gnl|bosTau2|chr10 (60669391-60669787)
               

               
               1-389, gnl|Hg17|chr14 (73601724-73602133)
               

               
               1-389, gnl|Mm7|chr12 (82433911-82434261)

	1-119, - strand, RNAz p=0.584577
	219-327, - strand, RNAz p=0.990615

	1-389, gnl\|bosTau2\|chr10 (60669391-60669787)
	1-389, gnl\|Hg17\|chr14 (73601724-73602133)
	1-389, gnl\|Mm7\|chr12 (82433911-82434261)