Non-Coding RNA Search

mA2-MI-P-A2-aey-f-01-1-UM.s1

Sequence:


               
               GGGGCGGAAGAAGGCAAAAGTGGATGAGTTTCCGCTCTGTGGCCACATGGTGTCAGATGA
GTACGAGCAACTCTCCTCTGAAGCTCTGGAGGCTGCTCGTATTTGTGCCAACAAGTACAT
GGTGAAAAGTTGTGGCAAAGATGGTTTTCACATCCGAGTGCGGCTACACCCCTTCCACGT
CATCCGCATCAATAAGATGCTGTCCTGTGCCGGAGCTGACAGGCTCCAGACAGGCATGCG
TGGTGCCTTTGGAAAGCCCCAGGGCACGGTGGCCCGCGTCCACATTGGCCAAGTCATCAT
GTCCATCCGCACCAAGCTGCAGAACAAGGAGCACGTGATTGAGGCCCTGCGCAGGGCCAA
GTTCAAGTTCCCTGGCCGCCAGAAGATCCACATCTCTAAGAAGTGGGGATTCACTAAGTT
CAACGCAGATGAATTTGAAAACATGGTGGCAGAAAAGCGGCTTATCCCCGATGGCTGCGG
GGTCAAATACATCCCTAACCGCGGCCCCCTGGACAAATGGCGGGCCCTGCACTCATGAGA
GCCTTGGCGGCGGCGTCCCTTCCTTAACGCTGAACAATAAACCTACTTTCCTGTCAAAAA
AAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGGAAGAAGGCAAAAGTGGATGAGTTTCCGCTCTGTGGCCACATGGTGTCAGATGA
GTACGAGCAACTCTCCTCTGAAGCTCTGGAGGCTGCTCGTATTTGTGCCAACAAGTACAT
GGTGAAAAGTTGTGGCAAAGATGGTTTTCACATCCGAGTGCGGCTACACCCCTTCCACGT
CATCCGCATCAATAAGATGCTGTCCTGTGCCGGAGCTGACAGGCTCCAGACAGGCATGCG
TGGTGCCTTTGGAAAGCCCCAGGGCACGGTGGCCCGCGTCCACATTGGCCAAGTCATCAT
GTCCATCCGCACCAAGCTGCAGAACAAGGAGCACGTGATTGAGGCCCTGCGCAGGGCCAA
GTTCAAGTTCCCTGGCCGCCAGAAGATCCACATCTCTAAGAAGTGGGGATTCACTAAGTT
CAACGCAGATGAATTTGAAAACATGGTGGCAGAAAAGCGGCTTATCCCCGATGGCTGCGG
GGTCAAATACATCCCTAACCGCGGCCCCCTGGACAAATGGCGGGCCCTGCACTCATGAGA
GCCTTGGCGGCGGCGTCCCTTCCTTAACGCTGAACAATAAACCTACTTTCCTGTCAAAAA
AAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|58760471|gb|AAW82143.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58760471|gb|AAW82143.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.626884
               

               
               160-279, + strand, RNAz p=0.677415

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.626884
               

               
               160-279, + strand, RNAz p=0.677415

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-546, gnl|bosTau2|chr10 (27289581-27290126)
               

               
               1-546, gnl|Hg17|chr14 (46190582-46190037)
               

               
               1-546, gnl|Mm7|chr12 (64223340-64222795)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr10 (27289581-27290126)
               

               
               1-546, gnl|Hg17|chr14 (46190582-46190037)
               

               
               1-546, gnl|Mm7|chr12 (64223340-64222795)

	1-119, - strand, RNAz p=0.626884
	160-279, + strand, RNAz p=0.677415

	1-546, gnl\|bosTau2\|chr10 (27289581-27290126)
	1-546, gnl\|Hg17\|chr14 (46190582-46190037)
	1-546, gnl\|Mm7\|chr12 (64223340-64222795)