Non-Coding RNA Search

mAY1-MI-P-AY1-nqq-b-01-0-UI.s1

Sequence:


               
               AAAAAGCCATTTTTAGAGCCTATTGCACTGTGTTCTTCTGTTGGCAAACATTTTCATGTG
GGAAAATGTGTTTTTCTTCTCACATGACTCCTTGGAATTGATTCTGAGGTGATGGTCTTA
GCACTTTAGATTGTGTCAAATTTTTTTCCCCTCTATCTTCAGATGTAAGCCAAAATTGGT
CTACTGTGTCTCTGGGGTAAGCACAATGGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCCATTTTTAGAGCCTATTGCACTGTGTTCTTCTGTTGGCAAACATTTTCATGTG
GGAAAATGTGTTTTTCTTCTCACATGACTCCTTGGAATTGATTCTGAGGTGATGGTCTTA
GCACTTTAGATTGTGTCAAATTTTTTTCCCCTCTATCTTCAGATGTAAGCCAAAATTGGT
CTACTGTGTCTCTGGGGTAAGCACAATGGCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               28-118, - strand, RNAz p=0.919879
               

               
               41-158, - strand, RNAz p=0.900626

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-118, - strand, RNAz p=0.919879
               

               
               41-158, - strand, RNAz p=0.900626

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-222, gnl|bosTau2|chr3 (15336882-15337098)
               

               
               2-222, gnl|canFam2|chr17 (61856400-61855844)
               

               
               2-222, gnl|dasNov1|scaffold_43930 (45487-46111)
               

               
               2-222, gnl|hg17|chr1 (142930528-142931166)
               

               
               2-222, gnl|Hg17|chr1 (142930942-142931162)
               

               
               2-222, gnl|mm7|chr3 (96434729-96435288)
               

               
               2-222, gnl|Mm7|chr3 (96435080-96435370)
               

               
               2-222, gnl|monDom2|scaffold_44 (2447240-2446590)
               

               
               2-222, gnl|oryCun1|scaffold_213552 (120466-119854)
               

               
               2-222, gnl|panTro1|chr1_random (17680967-17680327)
               

               
               2-222, gnl|rheMac2|chr1 (126196643-126195989)
               

               
               2-222, gnl|rn3|chr2 (191322386-191322907)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-222, gnl|bosTau2|chr3 (15336882-15337098)
               

               
               2-222, gnl|canFam2|chr17 (61856400-61855844)
               

               
               2-222, gnl|dasNov1|scaffold_43930 (45487-46111)
               

               
               2-222, gnl|hg17|chr1 (142930528-142931166)
               

               
               2-222, gnl|Hg17|chr1 (142930942-142931162)
               

               
               2-222, gnl|mm7|chr3 (96434729-96435288)
               

               
               2-222, gnl|Mm7|chr3 (96435080-96435370)
               

               
               2-222, gnl|monDom2|scaffold_44 (2447240-2446590)
               

               
               2-222, gnl|oryCun1|scaffold_213552 (120466-119854)
               

               
               2-222, gnl|panTro1|chr1_random (17680967-17680327)
               

               
               2-222, gnl|rheMac2|chr1 (126196643-126195989)
               

               
               2-222, gnl|rn3|chr2 (191322386-191322907)

	28-118, - strand, RNAz p=0.919879
	41-158, - strand, RNAz p=0.900626

	2-222, gnl\|bosTau2\|chr3 (15336882-15337098)
	2-222, gnl\|canFam2\|chr17 (61856400-61855844)
	2-222, gnl\|dasNov1\|scaffold_43930 (45487-46111)
	2-222, gnl\|hg17\|chr1 (142930528-142931166)
	2-222, gnl\|Hg17\|chr1 (142930942-142931162)
	2-222, gnl\|mm7\|chr3 (96434729-96435288)
	2-222, gnl\|Mm7\|chr3 (96435080-96435370)
	2-222, gnl\|monDom2\|scaffold_44 (2447240-2446590)
	2-222, gnl\|oryCun1\|scaffold_213552 (120466-119854)
	2-222, gnl\|panTro1\|chr1_random (17680967-17680327)
	2-222, gnl\|rheMac2\|chr1 (126196643-126195989)
	2-222, gnl\|rn3\|chr2 (191322386-191322907)