Non-Coding RNA Search

mAY1-MI-P-AY1-nrd-f-05-0-UI.s1

Sequence:


               
               AAGCAGCCGCCTCCCAACTGTGGCTTCCTATATATGTGGCCCTTTCCTCGTGGATGTACC
TGACCGTGCGTCGTGGTGGTCGCAAGCTGAGAGAAACAGAGATGGGAGCGCAGGCTGGAT
TTGGGTTTGGTGGGAGGTGCAGGCACGAGGAGAAACACGGGGGATCTGGAAGAGTCCCCA
TCCCAGGGGGACAGGAAGGAAGNCAGCTCCCACCCCCTCCCAGCCTTCTCATTTCTGCTT
TCTTATTGGACCCATCTTTATATATAACATTAATAAAAAAGAAGAAACCAAAAAAAAAAA
AAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCAGCCGCCTCCCAACTGTGGCTTCCTATATATGTGGCCCTTTCCTCGTGGATGTACC
TGACCGTGCGTCGTGGTGGTCGCAAGCTGAGAGAAACAGAGATGGGAGCGCAGGCTGGAT
TTGGGTTTGGTGGGAGGTGCAGGCACGAGGAGAAACACGGGGGATCTGGAAGAGTCCCCA
TCCCAGGGGGACAGGAAGGAAGNCAGCTCCCACCCCCTCCCAGCCTTCTCATTTCTGCTT
TCTTATTGGACCCATCTTTATATATAACATTAATAAAAAAGAAGAAACCAAAAAAAAAAA
AAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-287, - strand, RNAz p=0.97948
               

               
               155-262, - strand, RNAz p=0.686846

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-287, - strand, RNAz p=0.97948
               

               
               155-262, - strand, RNAz p=0.686846

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005220, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005220, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-287, gnl|bosTau2|chr19 (29408529-29408805)
               

               
               1-287, gnl|canFam2|chr9 (29342004-29342222)
               

               
               1-287, gnl|dasNov1|scaffold_30576 (18257-18433)
               

               
               1-287, gnl|echTel1|scaffold_292762 (6814-6612)
               

               
               1-287, gnl|hg17|chr17 (45422368-45422579)
               

               
               1-287, gnl|Hg17|chr17 (45422640-45422372)
               

               
               1-287, gnl|mm7|chr11 (95234337-95234105)
               

               
               1-287, gnl|Mm7|chr11 (95234043-95234331)
               

               
               1-287, gnl|monDom2|scaffold_18 (43479992-43479745)
               

               
               1-287, gnl|oryCun1|scaffold_175406 (45663-45895)
               

               
               1-287, gnl|panTro1|chr19_random (31031252-31031463)
               

               
               1-287, gnl|rheMac2|chr16 (34234123-34234338)
               

               
               1-287, gnl|rn3|chr10 (83821959-83821724)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-287, gnl|bosTau2|chr19 (29408529-29408805)
               

               
               1-287, gnl|canFam2|chr9 (29342004-29342222)
               

               
               1-287, gnl|dasNov1|scaffold_30576 (18257-18433)
               

               
               1-287, gnl|echTel1|scaffold_292762 (6814-6612)
               

               
               1-287, gnl|hg17|chr17 (45422368-45422579)
               

               
               1-287, gnl|Hg17|chr17 (45422640-45422372)
               

               
               1-287, gnl|mm7|chr11 (95234337-95234105)
               

               
               1-287, gnl|Mm7|chr11 (95234043-95234331)
               

               
               1-287, gnl|monDom2|scaffold_18 (43479992-43479745)
               

               
               1-287, gnl|oryCun1|scaffold_175406 (45663-45895)
               

               
               1-287, gnl|panTro1|chr19_random (31031252-31031463)
               

               
               1-287, gnl|rheMac2|chr16 (34234123-34234338)
               

               
               1-287, gnl|rn3|chr10 (83821959-83821724)

	119-287, - strand, RNAz p=0.97948
	155-262, - strand, RNAz p=0.686846

	1-287, gnl\|bosTau2\|chr19 (29408529-29408805)
	1-287, gnl\|canFam2\|chr9 (29342004-29342222)
	1-287, gnl\|dasNov1\|scaffold_30576 (18257-18433)
	1-287, gnl\|echTel1\|scaffold_292762 (6814-6612)
	1-287, gnl\|hg17\|chr17 (45422368-45422579)
	1-287, gnl\|Hg17\|chr17 (45422640-45422372)
	1-287, gnl\|mm7\|chr11 (95234337-95234105)
	1-287, gnl\|Mm7\|chr11 (95234043-95234331)
	1-287, gnl\|monDom2\|scaffold_18 (43479992-43479745)
	1-287, gnl\|oryCun1\|scaffold_175406 (45663-45895)
	1-287, gnl\|panTro1\|chr19_random (31031252-31031463)
	1-287, gnl\|rheMac2\|chr16 (34234123-34234338)
	1-287, gnl\|rn3\|chr10 (83821959-83821724)