Non-Coding RNA Search

mAY1-MI-P-AY1-nru-b-11-0-UI.s1

Sequence:


               
               TCGAAGCCCAGAGTATGAGGCTCAGCGGCGTGGGACTGAGGTTGGGGTCCAGCCTGGGCG
GGGGGTGCTGGAACGTGGCCCGTGTCTCCGGGGGGCTGCTTCCTAAGGTCTGGTGTTCGA
GGTCGCGTCTCTGCCACGTGGACCCCTGGATGCCGCGGCCCAGGCTGGCCCACGCACCTG
CCTTGCCCTACCTGGGCTCCTGCTGGCGCCAGGCTTTTCCCGCCCGGCTTTCAGGAATAG
CCGGTGTCCTGAGCCCTTCCTCTCTGCCTTTCTTTGCATTTCCAAACATGCGGATGCGTC
TCCACGTCCCGTTGATTCATCGAAAACACAAACAGAGCTAAGCGAGGCGCGTGGAGCCCG
CCAGCCTGCTGCAAGGTTTAGGGAAACACGTGTCGTGAGGGGAACAGCTGGGCGGCAGCG
GCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAAGCCCAGAGTATGAGGCTCAGCGGCGTGGGACTGAGGTTGGGGTCCAGCCTGGGCG
GGGGGTGCTGGAACGTGGCCCGTGTCTCCGGGGGGCTGCTTCCTAAGGTCTGGTGTTCGA
GGTCGCGTCTCTGCCACGTGGACCCCTGGATGCCGCGGCCCAGGCTGGCCCACGCACCTG
CCTTGCCCTACCTGGGCTCCTGCTGGCGCCAGGCTTTTCCCGCCCGGCTTTCAGGAATAG
CCGGTGTCCTGAGCCCTTCCTCTCTGCCTTTCTTTGCATTTCCAAACATGCGGATGCGTC
TCCACGTCCCGTTGATTCATCGAAAACACAAACAGAGCTAAGCGAGGCGCGTGGAGCCCG
CCAGCCTGCTGCAAGGTTTAGGGAAACACGTGTCGTGAGGGGAACAGCTGGGCGGCAGCG
GCCGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               184-288, - strand, RNAz p=0.987852
               

               
               202-318, - strand, RNAz p=0.939447

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-288, - strand, RNAz p=0.987852
               

               
               202-318, - strand, RNAz p=0.939447

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               184-423, gnl|bosTau2|chr25 (32059425-32059670)
               

               
               184-423, gnl|canFam2|chr6 (10887146-10886976)
               

               
               184-423, gnl|hg17|chr7 (101442577-101442770)
               

               
               184-423, gnl|Hg17|chr7 (101442602-101442857)
               

               
               184-423, gnl|loxAfr1|scaffold_9374 (5320-5151)
               

               
               184-423, gnl|mm7|chr5 (135275119-135274947)
               

               
               184-423, gnl|Mm7|chr5 (135275092-135274849)
               

               
               184-423, gnl|oryCun1|scaffold_200040 (60920-61074)
               

               
               184-423, gnl|panTro1|chr6 (103232177-103232370)
               

               
               184-423, gnl|rheMac2|chr3 (49515552-49515744)
               

               
               184-423, gnl|rn3|chr12 (21474246-21474438)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-423, gnl|bosTau2|chr25 (32059425-32059670)
               

               
               184-423, gnl|canFam2|chr6 (10887146-10886976)
               

               
               184-423, gnl|hg17|chr7 (101442577-101442770)
               

               
               184-423, gnl|Hg17|chr7 (101442602-101442857)
               

               
               184-423, gnl|loxAfr1|scaffold_9374 (5320-5151)
               

               
               184-423, gnl|mm7|chr5 (135275119-135274947)
               

               
               184-423, gnl|Mm7|chr5 (135275092-135274849)
               

               
               184-423, gnl|oryCun1|scaffold_200040 (60920-61074)
               

               
               184-423, gnl|panTro1|chr6 (103232177-103232370)
               

               
               184-423, gnl|rheMac2|chr3 (49515552-49515744)
               

               
               184-423, gnl|rn3|chr12 (21474246-21474438)

	184-288, - strand, RNAz p=0.987852
	202-318, - strand, RNAz p=0.939447

	184-423, gnl\|bosTau2\|chr25 (32059425-32059670)
	184-423, gnl\|canFam2\|chr6 (10887146-10886976)
	184-423, gnl\|hg17\|chr7 (101442577-101442770)
	184-423, gnl\|Hg17\|chr7 (101442602-101442857)
	184-423, gnl\|loxAfr1\|scaffold_9374 (5320-5151)
	184-423, gnl\|mm7\|chr5 (135275119-135274947)
	184-423, gnl\|Mm7\|chr5 (135275092-135274849)
	184-423, gnl\|oryCun1\|scaffold_200040 (60920-61074)
	184-423, gnl\|panTro1\|chr6 (103232177-103232370)
	184-423, gnl\|rheMac2\|chr3 (49515552-49515744)
	184-423, gnl\|rn3\|chr12 (21474246-21474438)