Non-Coding RNA Search

mCP0-MI-P-CP0-nvm-e-12-0-UI.s2

Sequence:


               
               CAAGCTCAAAAAGCATTTTTTATTCAGAGGAAAATNTAGAAAGGGTATTAAAATTAAACC
CGCTTTNTGAGTTTACAGAGGTGATGACAGAAATATAATGTACTTTGTTTTTCTTTCAGA
TCTCCAANTAAAGACGTGGATTCAGAAGAGAAGGAAATTGTGGTTTGGGTTTGCCAAGAA
GAGAAGACAGTCTGTGGGCTAACCAGACGCACCACCTNTGNTGATGTCATCCAGGCTTTG
NTTGAAGAACATGAGACTACATTTGGAGAGAAACGATTTCTTTTGGGGAAGCCCAGTGAT
TACTGCATCATAGAGAAATGGAGAGGTTTTGAAAGGGTTCTTCCTCCACTAACTAGAATC
CTGAAGCTCTGGAAAGCATGGGGAGATGAGCAGCCTAATATGCAGTTTGTTTTGGTTAAA
GCAGATGCTTTTCTTCCAGTTCCTTTGTGGCGGACAGCTGAAGCCAAATTAGTGCAAAAC
ACAGAAAAATTATGGGAGCTCAGCCCAGCAAATTACATGAAGACGTTCCCACCAGNTAAA
AAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCTCAAAAAGCATTTTTTATTCAGAGGAAAATNTAGAAAGGGTATTAAAATTAAACC
CGCTTTNTGAGTTTACAGAGGTGATGACAGAAATATAATGTACTTTGTTTTTCTTTCAGA
TCTCCAANTAAAGACGTGGATTCAGAAGAGAAGGAAATTGTGGTTTGGGTTTGCCAAGAA
GAGAAGACAGTCTGTGGGCTAACCAGACGCACCACCTNTGNTGATGTCATCCAGGCTTTG
NTTGAAGAACATGAGACTACATTTGGAGAGAAACGATTTCTTTTGGGGAAGCCCAGTGAT
TACTGCATCATAGAGAAATGGAGAGGTTTTGAAAGGGTTCTTCCTCCACTAACTAGAATC
CTGAAGCTCTGGAAAGCATGGGGAGATGAGCAGCCTAATATGCAGTTTGTTTTGGTTAAA
GCAGATGCTTTTCTTCCAGTTCCTTTGTGGCGGACAGCTGAAGCCAAATTAGTGCAAAAC
ACAGAAAAATTATGGGAGCTCAGCCCAGCAAATTACATGAAGACGTTCCCACCAGNTAAA
AAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               283-402, + strand, RNAz p=0.851716

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-402, + strand, RNAz p=0.851716

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-550, gnl|bosTau2|chr5 (13120310-13119765)
               

               
               5-550, gnl|Hg17|chr12 (84702322-84701778)
               

               
               5-550, gnl|Mm7|chr10 (102031355-102031881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-550, gnl|bosTau2|chr5 (13120310-13119765)
               

               
               5-550, gnl|Hg17|chr12 (84702322-84701778)
               

               
               5-550, gnl|Mm7|chr10 (102031355-102031881)

	5-550, gnl\|bosTau2\|chr5 (13120310-13119765)
	5-550, gnl\|Hg17\|chr12 (84702322-84701778)
	5-550, gnl\|Mm7\|chr10 (102031355-102031881)