Non-Coding RNA Search

mCP0-MI-P-CP0-nvq-b-10-0-UI.s1

Sequence:


               
               CCCGGGTTGACGGGCTTTTTTTTTCCCCCCCCAAGCGGGGGGGCTCGGGGATCTTTCCCC
CGAAGCCGAAAAAGGCAACCGGGAGGGAGGGGGAACCCAAGTTGCTTTTTGGGTTTGTGT
CCAACCCTTTTTCCCTTTCCCTTTTTTCTTGGAGCCCGTCCCCCCCCGCTCGCGTTTTTT
CCTTTTGTGGTCCCCGGTCCCCGCCCCGGTGGCCTTCCCTTTTCCCTGGGTTTGCAGGGG
GTCCCTTTTGTGGTTCCTTCCCCTCAGGTAGCCTTTTTCCCCCTGGGCCCCTTTTGGGGG
TGGGGGGGTTCCTTTTCCCCGTGTTTTTTTTCCTTTGGGGCTCCCCCCAAAGTTTTAAAA
GTTGCTTTGTAATTCCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGTTGACGGGCTTTTTTTTTCCCCCCCCAAGCGGGGGGGCTCGGGGATCTTTCCCC
CGAAGCCGAAAAAGGCAACCGGGAGGGAGGGGGAACCCAAGTTGCTTTTTGGGTTTGTGT
CCAACCCTTTTTCCCTTTCCCTTTTTTCTTGGAGCCCGTCCCCCCCCGCTCGCGTTTTTT
CCTTTTGTGGTCCCCGGTCCCCGCCCCGGTGGCCTTCCCTTTTCCCTGGGTTTGCAGGGG
GTCCCTTTTGTGGTTCCTTCCCCTCAGGTAGCCTTTTTCCCCCTGGGCCCCTTTTGGGGG
TGGGGGGGTTCCTTTTCCCCGTGTTTTTTTTCCTTTGGGGCTCCCCCCAAAGTTTTAAAA
GTTGCTTTGTAATTCCCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               2-94, - strand, RNAz p=0.708787
               

               
               40-158, + strand, RNAz p=0.62621
               

               
               269-386, - strand, RNAz p=0.999647

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-94, - strand, RNAz p=0.708787
               

               
               40-158, + strand, RNAz p=0.62621
               

               
               269-386, - strand, RNAz p=0.999647

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               65-134, - strand, RNAmicro p=0.998279

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               65-134, - strand, RNAmicro p=0.998279

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005770, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005770, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-386, gnl|bosTau2|chr8 (34340340-34340706)
               

               
               2-386, gnl|Hg17|chr15 (41872535-41873533)
               

               
               2-386, gnl|Mm7|chr4 (43677852-43678236)
               


               
               40-376, gnl|bosTau2|chr21 (34521357-34521695)
               

               
               40-376, gnl|canFam2|chr30 (13529309-13529647)
               

               
               40-376, gnl|dasNov1|scaffold_16689 (3219-3556)
               

               
               40-376, gnl|echTel1|scaffold_282561 (83957-83620)
               

               
               40-376, gnl|Hg17|chr15 (41873199-41873537)
               

               
               40-376, gnl|hg17|chr7 (95580772-95581104)
               

               
               40-376, gnl|loxAfr1|scaffold_7851 (61712-62041)
               

               
               40-376, gnl|mm7|chr2 (121191569-121191906)
               

               
               40-376, gnl|Mm7|chr2 (121191569-121191907)
               

               
               40-376, gnl|monDom2|scaffold_53 (10282095-10281758)
               

               
               40-376, gnl|oryCun1|scaffold_175340 (50895-51232)
               

               
               40-376, gnl|panTro1|chr6 (97191260-97191592)
               

               
               40-376, gnl|rheMac2|chr3 (120952377-120952044)
               

               
               40-376, gnl|rn3|chr3 (108157358-108157695)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-386, gnl|bosTau2|chr8 (34340340-34340706)
               

               
               2-386, gnl|Hg17|chr15 (41872535-41873533)
               

               
               2-386, gnl|Mm7|chr4 (43677852-43678236)
               


               
               40-376, gnl|bosTau2|chr21 (34521357-34521695)
               

               
               40-376, gnl|canFam2|chr30 (13529309-13529647)
               

               
               40-376, gnl|dasNov1|scaffold_16689 (3219-3556)
               

               
               40-376, gnl|echTel1|scaffold_282561 (83957-83620)
               

               
               40-376, gnl|Hg17|chr15 (41873199-41873537)
               

               
               40-376, gnl|hg17|chr7 (95580772-95581104)
               

               
               40-376, gnl|loxAfr1|scaffold_7851 (61712-62041)
               

               
               40-376, gnl|mm7|chr2 (121191569-121191906)
               

               
               40-376, gnl|Mm7|chr2 (121191569-121191907)
               

               
               40-376, gnl|monDom2|scaffold_53 (10282095-10281758)
               

               
               40-376, gnl|oryCun1|scaffold_175340 (50895-51232)
               

               
               40-376, gnl|panTro1|chr6 (97191260-97191592)
               

               
               40-376, gnl|rheMac2|chr3 (120952377-120952044)
               

               
               40-376, gnl|rn3|chr3 (108157358-108157695)

	2-94, - strand, RNAz p=0.708787
	40-158, + strand, RNAz p=0.62621
	269-386, - strand, RNAz p=0.999647

	2-386, gnl\|bosTau2\|chr8 (34340340-34340706)
	2-386, gnl\|Hg17\|chr15 (41872535-41873533)
	2-386, gnl\|Mm7\|chr4 (43677852-43678236)

	40-376, gnl\|bosTau2\|chr21 (34521357-34521695)
	40-376, gnl\|canFam2\|chr30 (13529309-13529647)
	40-376, gnl\|dasNov1\|scaffold_16689 (3219-3556)
	40-376, gnl\|echTel1\|scaffold_282561 (83957-83620)
	40-376, gnl\|Hg17\|chr15 (41873199-41873537)
	40-376, gnl\|hg17\|chr7 (95580772-95581104)
	40-376, gnl\|loxAfr1\|scaffold_7851 (61712-62041)
	40-376, gnl\|mm7\|chr2 (121191569-121191906)
	40-376, gnl\|Mm7\|chr2 (121191569-121191907)
	40-376, gnl\|monDom2\|scaffold_53 (10282095-10281758)
	40-376, gnl\|oryCun1\|scaffold_175340 (50895-51232)
	40-376, gnl\|panTro1\|chr6 (97191260-97191592)
	40-376, gnl\|rheMac2\|chr3 (120952377-120952044)
	40-376, gnl\|rn3\|chr3 (108157358-108157695)