Non-Coding RNA Search

mCP0-MI-P-CP0-nvs-d-08-0-UI.s1

Sequence:


               
               CGTCACACCCACCCCCGAGGCAGTGCCCGGCGCCACCAAGCCTCCCAACAGCAAGATCTC
GGGGCTCCTGGCCCAGGGCCTGCCTGGCTCCATCCCCCTCGCGCTGGCCCTCTCCAACTC
GGGGCTGCCCACCTCCGCATCCTACTTCCCCATCCTTCCGGGCCGAGGCAGCGCCTCCCT
GCCTGTGGGGGCCCCCGGCCTCATGGGTACCATGTCGTCTGGAACAGTAGCCTCGGTGAC
CCCCGACACGCCTGCCCTGGCTGCCTCGGGAGCTGGCGACTCGGCCCCAGCGGCGGCGGC
GGCAGTGGCGGCCACCTCTGTCCCGGTGCCCCCCGCCTCCATCATGGAGAGGATCTCTGC
GAGCAAGGCCTCATCTCGCCCATGATGGCCCGCTTGGCTGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCACACCCACCCCCGAGGCAGTGCCCGGCGCCACCAAGCCTCCCAACAGCAAGATCTC
GGGGCTCCTGGCCCAGGGCCTGCCTGGCTCCATCCCCCTCGCGCTGGCCCTCTCCAACTC
GGGGCTGCCCACCTCCGCATCCTACTTCCCCATCCTTCCGGGCCGAGGCAGCGCCTCCCT
GCCTGTGGGGGCCCCCGGCCTCATGGGTACCATGTCGTCTGGAACAGTAGCCTCGGTGAC
CCCCGACACGCCTGCCCTGGCTGCCTCGGGAGCTGGCGACTCGGCCCCAGCGGCGGCGGC
GGCAGTGGCGGCCACCTCTGTCCCGGTGCCCCCCGCCTCCATCATGGAGAGGATCTCTGC
GAGCAAGGCCTCATCTCGCCCATGATGGCCCGCTTGGCTGCGGCCGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               4-156, - strand, RNAz p=0.644288
               

               
               43-162, - strand, RNAz p=0.842758
               

               
               290-407, - strand, RNAz p=0.938779

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-156, - strand, RNAz p=0.644288
               

               
               43-162, - strand, RNAz p=0.842758
               

               
               290-407, - strand, RNAz p=0.938779

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               186-308, - strand, RNAmicro p=0.964741

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               186-308, - strand, RNAmicro p=0.964741

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               4-407, gnl|bosTau2|chr16 (22612428-22612817)
               

               
               4-407, gnl|canFam2|chr2 (88187989-88187710)
               

               
               4-407, gnl|danRer3|chr23 (40691534-40691813)
               

               
               4-407, gnl|fr1|chrUn (147713404-147713677)
               

               
               4-407, gnl|galGal2|chr21 (3710035-3710311)
               

               
               4-407, gnl|hg17|chr1 (10647696-10647975)
               

               
               4-407, gnl|Hg17|chr1 (10648118-10647729)
               

               
               4-407, gnl|mm7|chr4 (147928870-147928591)
               

               
               4-407, gnl|Mm7|chr4 (147928440-147928835)
               

               
               4-407, gnl|panTro1|chr1 (10845531-10845810)
               

               
               4-407, gnl|rheMac2|chr1 (13745415-13745694)
               

               
               4-407, gnl|rn3|chr5 (166027025-166026746)
               

               
               4-407, gnl|tetNig1|chr9 (2283386-2283642)
               

               
               4-407, gnl|xenTro1|scaffold_522 (232201-232438)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-407, gnl|bosTau2|chr16 (22612428-22612817)
               

               
               4-407, gnl|canFam2|chr2 (88187989-88187710)
               

               
               4-407, gnl|danRer3|chr23 (40691534-40691813)
               

               
               4-407, gnl|fr1|chrUn (147713404-147713677)
               

               
               4-407, gnl|galGal2|chr21 (3710035-3710311)
               

               
               4-407, gnl|hg17|chr1 (10647696-10647975)
               

               
               4-407, gnl|Hg17|chr1 (10648118-10647729)
               

               
               4-407, gnl|mm7|chr4 (147928870-147928591)
               

               
               4-407, gnl|Mm7|chr4 (147928440-147928835)
               

               
               4-407, gnl|panTro1|chr1 (10845531-10845810)
               

               
               4-407, gnl|rheMac2|chr1 (13745415-13745694)
               

               
               4-407, gnl|rn3|chr5 (166027025-166026746)
               

               
               4-407, gnl|tetNig1|chr9 (2283386-2283642)
               

               
               4-407, gnl|xenTro1|scaffold_522 (232201-232438)

	4-156, - strand, RNAz p=0.644288
	43-162, - strand, RNAz p=0.842758
	290-407, - strand, RNAz p=0.938779

	4-407, gnl\|bosTau2\|chr16 (22612428-22612817)
	4-407, gnl\|canFam2\|chr2 (88187989-88187710)
	4-407, gnl\|danRer3\|chr23 (40691534-40691813)
	4-407, gnl\|fr1\|chrUn (147713404-147713677)
	4-407, gnl\|galGal2\|chr21 (3710035-3710311)
	4-407, gnl\|hg17\|chr1 (10647696-10647975)
	4-407, gnl\|Hg17\|chr1 (10648118-10647729)
	4-407, gnl\|mm7\|chr4 (147928870-147928591)
	4-407, gnl\|Mm7\|chr4 (147928440-147928835)
	4-407, gnl\|panTro1\|chr1 (10845531-10845810)
	4-407, gnl\|rheMac2\|chr1 (13745415-13745694)
	4-407, gnl\|rn3\|chr5 (166027025-166026746)
	4-407, gnl\|tetNig1\|chr9 (2283386-2283642)
	4-407, gnl\|xenTro1\|scaffold_522 (232201-232438)