Non-Coding RNA Search

mCP1-MI-P-CP1-nwk-c-08-0-UI.s1

Sequence:


               
               GATTCAGCAAGCATTTGCTCACTTTAGGTCACAAATACATGAAAANCCAAGTTTCTATCT
TCAAAGTGAAGACAATGATTGTATATCCCACACAGGTCTATATAACCTGAATACAGGGCA
GACTGGGATGAATGCTAAAATAGACCTGAAAGAACTGATTTCAACTGGCAGAAGCTGGCA
AGGTTTGGTGGATGAGGTAGCCTTTGAGCTGGGTCTTAGAAAGTGATCAGTGTAGTTAAC
GGGGTTAAATGAAAACTAAATAGTAACAGAAATCTTTTAGGATTATCAAACAATTGTGCT
TTTATCTGTAGCCACATATGCTAGCTTGAACCATATGAAACTACCACCCTTTTGTGCAAG
GGCACTGTCAATATTGGCAATTTCACGTGGTTCAAACTCAGTTTTACTGTTCATTGTGCT
CTAAGATGTTGTTCCTATACTATGTTCTTTTCAAGAATACTTGAAAAGGCGAATTAACAG
GGACATGTTTGGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCAGCAAGCATTTGCTCACTTTAGGTCACAAATACATGAAAANCCAAGTTTCTATCT
TCAAAGTGAAGACAATGATTGTATATCCCACACAGGTCTATATAACCTGAATACAGGGCA
GACTGGGATGAATGCTAAAATAGACCTGAAAGAACTGATTTCAACTGGCAGAAGCTGGCA
AGGTTTGGTGGATGAGGTAGCCTTTGAGCTGGGTCTTAGAAAGTGATCAGTGTAGTTAAC
GGGGTTAAATGAAAACTAAATAGTAACAGAAATCTTTTAGGATTATCAAACAATTGTGCT
TTTATCTGTAGCCACATATGCTAGCTTGAACCATATGAAACTACCACCCTTTTGTGCAAG
GGCACTGTCAATATTGGCAATTTCACGTGGTTCAAACTCAGTTTTACTGTTCATTGTGCT
CTAAGATGTTGTTCCTATACTATGTTCTTTTCAAGAATACTTGAAAAGGCGAATTAACAG
GGACATGTTTGGCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               128-233, - strand, RNAz p=0.752626
               

               
               284-437, - strand, RNAz p=0.999923

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-233, - strand, RNAz p=0.752626
               

               
               284-437, - strand, RNAz p=0.999923

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-509, gnl|bosTau2|chr8 (23926919-23926410)
               

               
               2-509, gnl|Hg17|chr9 (74465356-74463317)
               

               
               2-509, gnl|Mm7|chr19 (18698668-18699379)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-509, gnl|bosTau2|chr8 (23926919-23926410)
               

               
               2-509, gnl|Hg17|chr9 (74465356-74463317)
               

               
               2-509, gnl|Mm7|chr19 (18698668-18699379)

	128-233, - strand, RNAz p=0.752626
	284-437, - strand, RNAz p=0.999923

	2-509, gnl\|bosTau2\|chr8 (23926919-23926410)
	2-509, gnl\|Hg17\|chr9 (74465356-74463317)
	2-509, gnl\|Mm7\|chr19 (18698668-18699379)