Non-Coding RNA Search

mCP1-MI-P-CP1-nwp-b-07-0-UI.s1

Sequence:


               
               TAGAAAAGGGCCCAGCATGTACGAGATGCTCAGAGTATCTGTTGACGAAGGGACACTGCA
AGTGTTAGTACAGAGTTTGGGATCCTGTTGTAAAAAGTGGGTTCTTggagttcccttgtg
gcaaagtgggttaaggatgtggtgttgtcagtggtgtggcttgggttccatccctggcct
aggaaattctacatgctgcaggtgtggccaaaaaaGTGGGTTCTTGATTCCTATTCCCAC
ACAGACACATTTCTCTAAGAAAAGGGTAGCAGGCTTGCTTAAGGTCTAGTCTAAAATGTT
CTCAAAAACCAAAGTATGATCTAACAAAATAACAATCAACTACAACAAAGAAATAAAAAC
CCTGACTACATTTTCCTCTGCTCTCTCTATTCTTCCTCCCTTTGTACTTAAAACACTAAA
GTACTCAGCTGAGATTAGAGTTCTGCTCCACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAAAGGGCCCAGCATGTACGAGATGCTCAGAGTATCTGTTGACGAAGGGACACTGCA
AGTGTTAGTACAGAGTTTGGGATCCTGTTGTAAAAAGTGGGTTCTTggagttcccttgtg
gcaaagtgggttaaggatgtggtgttgtcagtggtgtggcttgggttccatccctggcct
aggaaattctacatgctgcaggtgtggccaaaaaaGTGGGTTCTTGATTCCTATTCCCAC
ACAGACACATTTCTCTAAGAAAAGGGTAGCAGGCTTGCTTAAGGTCTAGTCTAAAATGTT
CTCAAAAACCAAAGTATGATCTAACAAAATAACAATCAACTACAACAAAGAAATAAAAAC
CCTGACTACATTTTCCTCTGCTCTCTCTATTCTTCCTCCCTTTGTACTTAAAACACTAAA
GTACTCAGCTGAGATTAGAGTTCTGCTCCACAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-106, + strand, RNAz p=0.897361
               

               
               349-465, - strand, RNAz p=0.95125

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-106, + strand, RNAz p=0.897361
               

               
               349-465, - strand, RNAz p=0.95125

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-106, gnl|bosTau2|chr17 (37027209-37027316)
               

               
               1-106, gnl|canFam2|chr26 (12825669-12825966)
               

               
               1-106, gnl|dasNov1|scaffold_24923 (11144-11444)
               

               
               1-106, gnl|hg17|chr12 (111114967-111115287)
               

               
               1-106, gnl|Hg17|chr12 (111114969-111115074)
               

               
               1-106, gnl|loxAfr1|scaffold_5453 (91380-91072)
               

               
               1-106, gnl|panTro1|chr10 (113814714-113815034)
               

               
               1-106, gnl|rheMac2|chr11 (113137152-113137474)
               


               
               212-465, gnl|bosTau2|chr17 (37027303-37027556)
               

               
               212-465, gnl|canFam2|chr26 (12825669-12825966)
               

               
               212-465, gnl|dasNov1|scaffold_24923 (11144-11444)
               

               
               212-465, gnl|hg17|chr12 (111114967-111115287)
               

               
               212-465, gnl|Hg17|chr12 (111115062-111115321)
               

               
               212-465, gnl|loxAfr1|scaffold_5453 (91380-91072)
               

               
               212-465, gnl|panTro1|chr10 (113814714-113815034)
               

               
               212-465, gnl|rheMac2|chr11 (113137152-113137474)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-106, gnl|bosTau2|chr17 (37027209-37027316)
               

               
               1-106, gnl|canFam2|chr26 (12825669-12825966)
               

               
               1-106, gnl|dasNov1|scaffold_24923 (11144-11444)
               

               
               1-106, gnl|hg17|chr12 (111114967-111115287)
               

               
               1-106, gnl|Hg17|chr12 (111114969-111115074)
               

               
               1-106, gnl|loxAfr1|scaffold_5453 (91380-91072)
               

               
               1-106, gnl|panTro1|chr10 (113814714-113815034)
               

               
               1-106, gnl|rheMac2|chr11 (113137152-113137474)
               


               
               212-465, gnl|bosTau2|chr17 (37027303-37027556)
               

               
               212-465, gnl|canFam2|chr26 (12825669-12825966)
               

               
               212-465, gnl|dasNov1|scaffold_24923 (11144-11444)
               

               
               212-465, gnl|hg17|chr12 (111114967-111115287)
               

               
               212-465, gnl|Hg17|chr12 (111115062-111115321)
               

               
               212-465, gnl|loxAfr1|scaffold_5453 (91380-91072)
               

               
               212-465, gnl|panTro1|chr10 (113814714-113815034)
               

               
               212-465, gnl|rheMac2|chr11 (113137152-113137474)

	1-106, + strand, RNAz p=0.897361
	349-465, - strand, RNAz p=0.95125

	1-106, gnl\|bosTau2\|chr17 (37027209-37027316)
	1-106, gnl\|canFam2\|chr26 (12825669-12825966)
	1-106, gnl\|dasNov1\|scaffold_24923 (11144-11444)
	1-106, gnl\|hg17\|chr12 (111114967-111115287)
	1-106, gnl\|Hg17\|chr12 (111114969-111115074)
	1-106, gnl\|loxAfr1\|scaffold_5453 (91380-91072)
	1-106, gnl\|panTro1\|chr10 (113814714-113815034)
	1-106, gnl\|rheMac2\|chr11 (113137152-113137474)

	212-465, gnl\|bosTau2\|chr17 (37027303-37027556)
	212-465, gnl\|canFam2\|chr26 (12825669-12825966)
	212-465, gnl\|dasNov1\|scaffold_24923 (11144-11444)
	212-465, gnl\|hg17\|chr12 (111114967-111115287)
	212-465, gnl\|Hg17\|chr12 (111115062-111115321)
	212-465, gnl\|loxAfr1\|scaffold_5453 (91380-91072)
	212-465, gnl\|panTro1\|chr10 (113814714-113815034)
	212-465, gnl\|rheMac2\|chr11 (113137152-113137474)