Non-Coding RNA Search

mCP1-MI-P-CP1-nwr-a-07-0-UI.s1

Sequence:


               
               AGGAGTTTGAGCAACATCAACGGGCAGCTGGTCTATGCCGGAGCTGATGCCTGACCCCAG
CGCTGACTCCAAGCGCTCCCCCAGACCTTCCTCTCTTACCAAGACCTCCCCCACCACTCC
TGAGGTTTCTGCTCACAACAGTCCTTGCACCTCGAAACCTGCTACTCCAGCTCCAAGTGA
GAAAGGAGAGGGCATGAGGACACCTCTGGAGAAGGATGAAGCAGAAATCCAGGAGGAGAA
GCCAGGGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGTTTGAGCAACATCAACGGGCAGCTGGTCTATGCCGGAGCTGATGCCTGACCCCAG
CGCTGACTCCAAGCGCTCCCCCAGACCTTCCTCTCTTACCAAGACCTCCCCCACCACTCC
TGAGGTTTCTGCTCACAACAGTCCTTGCACCTCGAAACCTGCTACTCCAGCTCCAAGTGA
GAAAGGAGAGGGCATGAGGACACCTCTGGAGAAGGATGAAGCAGAAATCCAGGAGGAGAA
GCCAGGGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-189, - strand, RNAz p=0.971888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-189, - strand, RNAz p=0.971888

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               89-189, DA436107 CTONG2 Homo sapiens cDNA clone CTONG2002997 5', mRNA 
(dbj|DA436107.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DA490317 FCBBF3 Homo sapiens cDNA clone FCBBF3001500 5', mRNA 
(dbj|DA490317.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DA519863 FEBRA2 Homo sapiens cDNA clone FEBRA2009529 5', mRNA 
(dbj|DA519863.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DB042684 TESTI2 Homo sapiens cDNA clone TESTI2030096 5', mRNA 
(dbj|DB042684.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DKFZp469K0563_r1 469 (synonym (emb|CR786935.1|), blast E-value=2e-27, 
identity=91.09% 
               

               
               78-187, QV4-BT0407-260100-088-e12 BT0407 Homo sapiens cDNA, mRNA sequence 
(gb|AW601903.1|), blast E-value=5e-28, identity=90%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               89-189, DA436107 CTONG2 Homo sapiens cDNA clone CTONG2002997 5', mRNA 
(dbj|DA436107.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DA490317 FCBBF3 Homo sapiens cDNA clone FCBBF3001500 5', mRNA 
(dbj|DA490317.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DA519863 FEBRA2 Homo sapiens cDNA clone FEBRA2009529 5', mRNA 
(dbj|DA519863.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DB042684 TESTI2 Homo sapiens cDNA clone TESTI2030096 5', mRNA 
(dbj|DB042684.1|), blast E-value=2e-27, identity=91.09% 
               

               
               89-189, DKFZp469K0563_r1 469 (synonym (emb|CR786935.1|), blast E-value=2e-27, 
identity=91.09% 
               

               
               78-187, QV4-BT0407-260100-088-e12 BT0407 Homo sapiens cDNA, mRNA sequence 
(gb|AW601903.1|), blast E-value=5e-28, identity=90%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-189, gnl|bosTau2|chr19 (15302967-15302782)
               

               
               1-189, gnl|Hg17|chr17 (7750916-7751103)
               

               
               1-189, gnl|Mm7|chr11 (69431522-69431329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr19 (15302967-15302782)
               

               
               1-189, gnl|Hg17|chr17 (7750916-7751103)
               

               
               1-189, gnl|Mm7|chr11 (69431522-69431329)

	89-189, DA436107 CTONG2 Homo sapiens cDNA clone CTONG2002997 5', mRNA (dbj\|DA436107.1\|), blast E-value=2e-27, identity=91.09%
	89-189, DA490317 FCBBF3 Homo sapiens cDNA clone FCBBF3001500 5', mRNA (dbj\|DA490317.1\|), blast E-value=2e-27, identity=91.09%
	89-189, DA519863 FEBRA2 Homo sapiens cDNA clone FEBRA2009529 5', mRNA (dbj\|DA519863.1\|), blast E-value=2e-27, identity=91.09%
	89-189, DB042684 TESTI2 Homo sapiens cDNA clone TESTI2030096 5', mRNA (dbj\|DB042684.1\|), blast E-value=2e-27, identity=91.09%
	89-189, DKFZp469K0563_r1 469 (synonym (emb\|CR786935.1\|), blast E-value=2e-27, identity=91.09%
	78-187, QV4-BT0407-260100-088-e12 BT0407 Homo sapiens cDNA, mRNA sequence (gb\|AW601903.1\|), blast E-value=5e-28, identity=90%

	1-189, gnl\|bosTau2\|chr19 (15302967-15302782)
	1-189, gnl\|Hg17\|chr17 (7750916-7751103)
	1-189, gnl\|Mm7\|chr11 (69431522-69431329)